Cargando…
Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species
Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10421444/ https://www.ncbi.nlm.nih.gov/pubmed/37570944 http://dx.doi.org/10.3390/plants12152790 |
_version_ | 1785088981854060544 |
---|---|
author | Cheng, Zhihan Wen, Shiqi Wu, Yuke Shang, Lina Wu, Lin Lyu, Dianqiu Yu, Hongtao Wang, Jichun Jian, Hongju |
author_facet | Cheng, Zhihan Wen, Shiqi Wu, Yuke Shang, Lina Wu, Lin Lyu, Dianqiu Yu, Hongtao Wang, Jichun Jian, Hongju |
author_sort | Cheng, Zhihan |
collection | PubMed |
description | Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology. |
format | Online Article Text |
id | pubmed-10421444 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-104214442023-08-12 Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species Cheng, Zhihan Wen, Shiqi Wu, Yuke Shang, Lina Wu, Lin Lyu, Dianqiu Yu, Hongtao Wang, Jichun Jian, Hongju Plants (Basel) Article Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology. MDPI 2023-07-27 /pmc/articles/PMC10421444/ /pubmed/37570944 http://dx.doi.org/10.3390/plants12152790 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Cheng, Zhihan Wen, Shiqi Wu, Yuke Shang, Lina Wu, Lin Lyu, Dianqiu Yu, Hongtao Wang, Jichun Jian, Hongju Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species |
title | Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species |
title_full | Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species |
title_fullStr | Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species |
title_full_unstemmed | Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species |
title_short | Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species |
title_sort | comparatively evolution and expression analysis of grf transcription factor genes in seven plant species |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10421444/ https://www.ncbi.nlm.nih.gov/pubmed/37570944 http://dx.doi.org/10.3390/plants12152790 |
work_keys_str_mv | AT chengzhihan comparativelyevolutionandexpressionanalysisofgrftranscriptionfactorgenesinsevenplantspecies AT wenshiqi comparativelyevolutionandexpressionanalysisofgrftranscriptionfactorgenesinsevenplantspecies AT wuyuke comparativelyevolutionandexpressionanalysisofgrftranscriptionfactorgenesinsevenplantspecies AT shanglina comparativelyevolutionandexpressionanalysisofgrftranscriptionfactorgenesinsevenplantspecies AT wulin comparativelyevolutionandexpressionanalysisofgrftranscriptionfactorgenesinsevenplantspecies AT lyudianqiu comparativelyevolutionandexpressionanalysisofgrftranscriptionfactorgenesinsevenplantspecies AT yuhongtao comparativelyevolutionandexpressionanalysisofgrftranscriptionfactorgenesinsevenplantspecies AT wangjichun comparativelyevolutionandexpressionanalysisofgrftranscriptionfactorgenesinsevenplantspecies AT jianhongju comparativelyevolutionandexpressionanalysisofgrftranscriptionfactorgenesinsevenplantspecies |