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Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species

Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of...

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Autores principales: Cheng, Zhihan, Wen, Shiqi, Wu, Yuke, Shang, Lina, Wu, Lin, Lyu, Dianqiu, Yu, Hongtao, Wang, Jichun, Jian, Hongju
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10421444/
https://www.ncbi.nlm.nih.gov/pubmed/37570944
http://dx.doi.org/10.3390/plants12152790
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author Cheng, Zhihan
Wen, Shiqi
Wu, Yuke
Shang, Lina
Wu, Lin
Lyu, Dianqiu
Yu, Hongtao
Wang, Jichun
Jian, Hongju
author_facet Cheng, Zhihan
Wen, Shiqi
Wu, Yuke
Shang, Lina
Wu, Lin
Lyu, Dianqiu
Yu, Hongtao
Wang, Jichun
Jian, Hongju
author_sort Cheng, Zhihan
collection PubMed
description Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology.
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spelling pubmed-104214442023-08-12 Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species Cheng, Zhihan Wen, Shiqi Wu, Yuke Shang, Lina Wu, Lin Lyu, Dianqiu Yu, Hongtao Wang, Jichun Jian, Hongju Plants (Basel) Article Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology. MDPI 2023-07-27 /pmc/articles/PMC10421444/ /pubmed/37570944 http://dx.doi.org/10.3390/plants12152790 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cheng, Zhihan
Wen, Shiqi
Wu, Yuke
Shang, Lina
Wu, Lin
Lyu, Dianqiu
Yu, Hongtao
Wang, Jichun
Jian, Hongju
Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species
title Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species
title_full Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species
title_fullStr Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species
title_full_unstemmed Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species
title_short Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species
title_sort comparatively evolution and expression analysis of grf transcription factor genes in seven plant species
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10421444/
https://www.ncbi.nlm.nih.gov/pubmed/37570944
http://dx.doi.org/10.3390/plants12152790
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