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PlantMetSuite: A User-Friendly Web-Based Tool for Metabolomics Analysis and Visualisation

The advancement of mass spectrometry technologies has revolutionised plant metabolomics research by enabling the acquisition of raw metabolomics data. However, the identification, analysis, and visualisation of these data require specialised tools. Existing solutions lack a dedicated plant-specific...

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Detalles Bibliográficos
Autores principales: Liu, Yu, Liu, Hao-Zhuo, Chen, Ding-Kang, Zeng, Hong-Yun, Chen, Yi-Li, Yao, Nan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10421497/
https://www.ncbi.nlm.nih.gov/pubmed/37571033
http://dx.doi.org/10.3390/plants12152880
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author Liu, Yu
Liu, Hao-Zhuo
Chen, Ding-Kang
Zeng, Hong-Yun
Chen, Yi-Li
Yao, Nan
author_facet Liu, Yu
Liu, Hao-Zhuo
Chen, Ding-Kang
Zeng, Hong-Yun
Chen, Yi-Li
Yao, Nan
author_sort Liu, Yu
collection PubMed
description The advancement of mass spectrometry technologies has revolutionised plant metabolomics research by enabling the acquisition of raw metabolomics data. However, the identification, analysis, and visualisation of these data require specialised tools. Existing solutions lack a dedicated plant-specific metabolite database and pose usability challenges. To address these limitations, we developed PlantMetSuite, a web-based tool for comprehensive metabolomics analysis and visualisation. PlantMetSuite encompasses interactive bioinformatics tools and databases specifically tailored to plant metabolomics data, facilitating upstream-to-downstream analysis in metabolomics and supporting integrative multi-omics investigations. PlantMetSuite can be accessed directly through a user’s browser without the need for installation or programming skills. The tool is freely available and will undergo regular updates and expansions to incorporate additional libraries and newly published metabolomics analysis methods. The tool’s significance lies in empowering researchers with an accessible and customisable platform for unlocking plant metabolomics insights.
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spelling pubmed-104214972023-08-12 PlantMetSuite: A User-Friendly Web-Based Tool for Metabolomics Analysis and Visualisation Liu, Yu Liu, Hao-Zhuo Chen, Ding-Kang Zeng, Hong-Yun Chen, Yi-Li Yao, Nan Plants (Basel) Article The advancement of mass spectrometry technologies has revolutionised plant metabolomics research by enabling the acquisition of raw metabolomics data. However, the identification, analysis, and visualisation of these data require specialised tools. Existing solutions lack a dedicated plant-specific metabolite database and pose usability challenges. To address these limitations, we developed PlantMetSuite, a web-based tool for comprehensive metabolomics analysis and visualisation. PlantMetSuite encompasses interactive bioinformatics tools and databases specifically tailored to plant metabolomics data, facilitating upstream-to-downstream analysis in metabolomics and supporting integrative multi-omics investigations. PlantMetSuite can be accessed directly through a user’s browser without the need for installation or programming skills. The tool is freely available and will undergo regular updates and expansions to incorporate additional libraries and newly published metabolomics analysis methods. The tool’s significance lies in empowering researchers with an accessible and customisable platform for unlocking plant metabolomics insights. MDPI 2023-08-06 /pmc/articles/PMC10421497/ /pubmed/37571033 http://dx.doi.org/10.3390/plants12152880 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Yu
Liu, Hao-Zhuo
Chen, Ding-Kang
Zeng, Hong-Yun
Chen, Yi-Li
Yao, Nan
PlantMetSuite: A User-Friendly Web-Based Tool for Metabolomics Analysis and Visualisation
title PlantMetSuite: A User-Friendly Web-Based Tool for Metabolomics Analysis and Visualisation
title_full PlantMetSuite: A User-Friendly Web-Based Tool for Metabolomics Analysis and Visualisation
title_fullStr PlantMetSuite: A User-Friendly Web-Based Tool for Metabolomics Analysis and Visualisation
title_full_unstemmed PlantMetSuite: A User-Friendly Web-Based Tool for Metabolomics Analysis and Visualisation
title_short PlantMetSuite: A User-Friendly Web-Based Tool for Metabolomics Analysis and Visualisation
title_sort plantmetsuite: a user-friendly web-based tool for metabolomics analysis and visualisation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10421497/
https://www.ncbi.nlm.nih.gov/pubmed/37571033
http://dx.doi.org/10.3390/plants12152880
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