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The NWRD Dataset: An Open-Source Annotated Segmentation Dataset of Diseased Wheat Crop

Wheat stripe rust disease (WRD) is extremely detrimental to wheat crop health, and it severely affects the crop yield, increasing the risk of food insecurity. Manual inspection by trained personnel is carried out to inspect the disease spread and extent of damage to wheat fields. However, this is qu...

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Autores principales: Anwar, Hirra, Khan, Saad Ullah, Ghaffar, Muhammad Mohsin, Fayyaz, Muhammad, Khan, Muhammad Jawad, Weis, Christian, Wehn, Norbert, Shafait, Faisal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10422341/
https://www.ncbi.nlm.nih.gov/pubmed/37571726
http://dx.doi.org/10.3390/s23156942
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author Anwar, Hirra
Khan, Saad Ullah
Ghaffar, Muhammad Mohsin
Fayyaz, Muhammad
Khan, Muhammad Jawad
Weis, Christian
Wehn, Norbert
Shafait, Faisal
author_facet Anwar, Hirra
Khan, Saad Ullah
Ghaffar, Muhammad Mohsin
Fayyaz, Muhammad
Khan, Muhammad Jawad
Weis, Christian
Wehn, Norbert
Shafait, Faisal
author_sort Anwar, Hirra
collection PubMed
description Wheat stripe rust disease (WRD) is extremely detrimental to wheat crop health, and it severely affects the crop yield, increasing the risk of food insecurity. Manual inspection by trained personnel is carried out to inspect the disease spread and extent of damage to wheat fields. However, this is quite inefficient, time-consuming, and laborious, owing to the large area of wheat plantations. Artificial intelligence (AI) and deep learning (DL) offer efficient and accurate solutions to such real-world problems. By analyzing large amounts of data, AI algorithms can identify patterns that are difficult for humans to detect, enabling early disease detection and prevention. However, deep learning models are data-driven, and scarcity of data related to specific crop diseases is one major hindrance in developing models. To overcome this limitation, in this work, we introduce an annotated real-world semantic segmentation dataset named the NUST Wheat Rust Disease (NWRD) dataset. Multileaf images from wheat fields under various illumination conditions with complex backgrounds were collected, preprocessed, and manually annotated to construct a segmentation dataset specific to wheat stripe rust disease. Classification of WRD into different types and categories is a task that has been solved in the literature; however, semantic segmentation of wheat crops to identify the specific areas of plants and leaves affected by the disease remains a challenge. For this reason, in this work, we target semantic segmentation of WRD to estimate the extent of disease spread in wheat fields. Sections of fields where the disease is prevalent need to be segmented to ensure that the sick plants are quarantined and remedial actions are taken. This will consequently limit the use of harmful fungicides only on the targeted disease area instead of the majority of wheat fields, promoting environmentally friendly and sustainable farming solutions. Owing to the complexity of the proposed NWRD segmentation dataset, in our experiments, promising results were obtained using the UNet semantic segmentation model and the proposed adaptive patching with feedback (APF) technique, which produced a precision of 0.506, recall of 0.624, and F1 score of 0.557 for the rust class.
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spelling pubmed-104223412023-08-13 The NWRD Dataset: An Open-Source Annotated Segmentation Dataset of Diseased Wheat Crop Anwar, Hirra Khan, Saad Ullah Ghaffar, Muhammad Mohsin Fayyaz, Muhammad Khan, Muhammad Jawad Weis, Christian Wehn, Norbert Shafait, Faisal Sensors (Basel) Article Wheat stripe rust disease (WRD) is extremely detrimental to wheat crop health, and it severely affects the crop yield, increasing the risk of food insecurity. Manual inspection by trained personnel is carried out to inspect the disease spread and extent of damage to wheat fields. However, this is quite inefficient, time-consuming, and laborious, owing to the large area of wheat plantations. Artificial intelligence (AI) and deep learning (DL) offer efficient and accurate solutions to such real-world problems. By analyzing large amounts of data, AI algorithms can identify patterns that are difficult for humans to detect, enabling early disease detection and prevention. However, deep learning models are data-driven, and scarcity of data related to specific crop diseases is one major hindrance in developing models. To overcome this limitation, in this work, we introduce an annotated real-world semantic segmentation dataset named the NUST Wheat Rust Disease (NWRD) dataset. Multileaf images from wheat fields under various illumination conditions with complex backgrounds were collected, preprocessed, and manually annotated to construct a segmentation dataset specific to wheat stripe rust disease. Classification of WRD into different types and categories is a task that has been solved in the literature; however, semantic segmentation of wheat crops to identify the specific areas of plants and leaves affected by the disease remains a challenge. For this reason, in this work, we target semantic segmentation of WRD to estimate the extent of disease spread in wheat fields. Sections of fields where the disease is prevalent need to be segmented to ensure that the sick plants are quarantined and remedial actions are taken. This will consequently limit the use of harmful fungicides only on the targeted disease area instead of the majority of wheat fields, promoting environmentally friendly and sustainable farming solutions. Owing to the complexity of the proposed NWRD segmentation dataset, in our experiments, promising results were obtained using the UNet semantic segmentation model and the proposed adaptive patching with feedback (APF) technique, which produced a precision of 0.506, recall of 0.624, and F1 score of 0.557 for the rust class. MDPI 2023-08-04 /pmc/articles/PMC10422341/ /pubmed/37571726 http://dx.doi.org/10.3390/s23156942 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Anwar, Hirra
Khan, Saad Ullah
Ghaffar, Muhammad Mohsin
Fayyaz, Muhammad
Khan, Muhammad Jawad
Weis, Christian
Wehn, Norbert
Shafait, Faisal
The NWRD Dataset: An Open-Source Annotated Segmentation Dataset of Diseased Wheat Crop
title The NWRD Dataset: An Open-Source Annotated Segmentation Dataset of Diseased Wheat Crop
title_full The NWRD Dataset: An Open-Source Annotated Segmentation Dataset of Diseased Wheat Crop
title_fullStr The NWRD Dataset: An Open-Source Annotated Segmentation Dataset of Diseased Wheat Crop
title_full_unstemmed The NWRD Dataset: An Open-Source Annotated Segmentation Dataset of Diseased Wheat Crop
title_short The NWRD Dataset: An Open-Source Annotated Segmentation Dataset of Diseased Wheat Crop
title_sort nwrd dataset: an open-source annotated segmentation dataset of diseased wheat crop
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10422341/
https://www.ncbi.nlm.nih.gov/pubmed/37571726
http://dx.doi.org/10.3390/s23156942
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