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Interpolating Nonadiabatic Molecular Dynamics Hamiltonian with Bidirectional Long Short-Term Memory Networks
[Image: see text] Essential for understanding far-from-equilibrium processes, nonadiabatic (NA) molecular dynamics (MD) requires expensive calculations of the excitation energies and NA couplings. Machine learning (ML) can simplify computation; however, the NA Hamiltonian requires complex ML models...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10424239/ https://www.ncbi.nlm.nih.gov/pubmed/37530451 http://dx.doi.org/10.1021/acs.jpclett.3c01723 |
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author | Wang, Bipeng Winkler, Ludwig Wu, Yifan Müller, Klaus-Robert Sauceda, Huziel E. Prezhdo, Oleg V. |
author_facet | Wang, Bipeng Winkler, Ludwig Wu, Yifan Müller, Klaus-Robert Sauceda, Huziel E. Prezhdo, Oleg V. |
author_sort | Wang, Bipeng |
collection | PubMed |
description | [Image: see text] Essential for understanding far-from-equilibrium processes, nonadiabatic (NA) molecular dynamics (MD) requires expensive calculations of the excitation energies and NA couplings. Machine learning (ML) can simplify computation; however, the NA Hamiltonian requires complex ML models due to its intricate relationship to atomic geometry. Working directly in the time domain, we employ bidirectional long short-term memory networks (Bi-LSTM) to interpolate the Hamiltonian. Applying this multiscale approach to three metal-halide perovskite systems, we achieve two orders of magnitude computational savings compared to direct ab initio calculation. Reasonable charge trapping and recombination times are obtained with NA Hamiltonian sampling every half a picosecond. The Bi-LSTM-NAMD method outperforms earlier models and captures both slow and fast time scales. In combination with ML force fields, the methodology extends NAMD simulation times from picoseconds to nanoseconds, comparable to charge carrier lifetimes in many materials. Nanosecond sampling is particularly important in systems containing defects, boundaries, interfaces, etc. that can undergo slow rearrangements. |
format | Online Article Text |
id | pubmed-10424239 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-104242392023-08-15 Interpolating Nonadiabatic Molecular Dynamics Hamiltonian with Bidirectional Long Short-Term Memory Networks Wang, Bipeng Winkler, Ludwig Wu, Yifan Müller, Klaus-Robert Sauceda, Huziel E. Prezhdo, Oleg V. J Phys Chem Lett [Image: see text] Essential for understanding far-from-equilibrium processes, nonadiabatic (NA) molecular dynamics (MD) requires expensive calculations of the excitation energies and NA couplings. Machine learning (ML) can simplify computation; however, the NA Hamiltonian requires complex ML models due to its intricate relationship to atomic geometry. Working directly in the time domain, we employ bidirectional long short-term memory networks (Bi-LSTM) to interpolate the Hamiltonian. Applying this multiscale approach to three metal-halide perovskite systems, we achieve two orders of magnitude computational savings compared to direct ab initio calculation. Reasonable charge trapping and recombination times are obtained with NA Hamiltonian sampling every half a picosecond. The Bi-LSTM-NAMD method outperforms earlier models and captures both slow and fast time scales. In combination with ML force fields, the methodology extends NAMD simulation times from picoseconds to nanoseconds, comparable to charge carrier lifetimes in many materials. Nanosecond sampling is particularly important in systems containing defects, boundaries, interfaces, etc. that can undergo slow rearrangements. American Chemical Society 2023-08-02 /pmc/articles/PMC10424239/ /pubmed/37530451 http://dx.doi.org/10.1021/acs.jpclett.3c01723 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Wang, Bipeng Winkler, Ludwig Wu, Yifan Müller, Klaus-Robert Sauceda, Huziel E. Prezhdo, Oleg V. Interpolating Nonadiabatic Molecular Dynamics Hamiltonian with Bidirectional Long Short-Term Memory Networks |
title | Interpolating
Nonadiabatic Molecular Dynamics Hamiltonian
with Bidirectional Long Short-Term Memory Networks |
title_full | Interpolating
Nonadiabatic Molecular Dynamics Hamiltonian
with Bidirectional Long Short-Term Memory Networks |
title_fullStr | Interpolating
Nonadiabatic Molecular Dynamics Hamiltonian
with Bidirectional Long Short-Term Memory Networks |
title_full_unstemmed | Interpolating
Nonadiabatic Molecular Dynamics Hamiltonian
with Bidirectional Long Short-Term Memory Networks |
title_short | Interpolating
Nonadiabatic Molecular Dynamics Hamiltonian
with Bidirectional Long Short-Term Memory Networks |
title_sort | interpolating
nonadiabatic molecular dynamics hamiltonian
with bidirectional long short-term memory networks |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10424239/ https://www.ncbi.nlm.nih.gov/pubmed/37530451 http://dx.doi.org/10.1021/acs.jpclett.3c01723 |
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