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Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits

PURPOSE: The genetic architecture of corneal dysfunction remains poorly understood. Epidemiological and clinical evidence suggests a relationship between corneal structural features and anthropometric measures. We used global and local genetic similarity analysis to identify genomic features that ma...

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Autores principales: Cousins, Henry C., Cousins, Clara C., Valluru, Girish, Altman, Russ B., Liu, Yutao, Pasquale, Louis R., Ahmad, Sumayya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Association for Research in Vision and Ophthalmology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10424803/
https://www.ncbi.nlm.nih.gov/pubmed/37561511
http://dx.doi.org/10.1167/tvst.12.8.8
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author Cousins, Henry C.
Cousins, Clara C.
Valluru, Girish
Altman, Russ B.
Liu, Yutao
Pasquale, Louis R.
Ahmad, Sumayya
author_facet Cousins, Henry C.
Cousins, Clara C.
Valluru, Girish
Altman, Russ B.
Liu, Yutao
Pasquale, Louis R.
Ahmad, Sumayya
author_sort Cousins, Henry C.
collection PubMed
description PURPOSE: The genetic architecture of corneal dysfunction remains poorly understood. Epidemiological and clinical evidence suggests a relationship between corneal structural features and anthropometric measures. We used global and local genetic similarity analysis to identify genomic features that may underlie structural corneal dysfunction. METHODS: We assembled genome-wide association study summary statistics for corneal features (central corneal thickness, corneal hysteresis [CH], corneal resistance factor [CRF], and the 3 mm index of keratometry) and anthropometric traits (body mass index, weight, and height) in Europeans. We calculated global genetic correlations (r(g)) between traits using linkage disequilibrium (LD) score regression and local genetic covariance using ρ-HESS, which partitions the genome and performs regression with LD regions. Finally, we identified genes located within regions of significant genetic covariance and analyzed patterns of tissue expression and pathway enrichment. RESULTS: Global LD score regression revealed significant negative correlations between height and both CH (r(g) = −0.12; P = 2.0 × 10(−7)) and CRF (r(g) = −0.11; P = 6.9 × 10(−7)). Local analysis revealed 68 genomic regions exhibiting significant local genetic covariance between CRF and height, containing 2874 unique genes. Pathway analysis of genes in regions with significant local r(g) revealed enrichment among signaling pathways with known keratoconus associations, including cadherin and Wnt signaling, as well as enrichment of genes modulated by copper and zinc ions. CONCLUSIONS: Corneal biophysical parameters and height share a common genomic architecture, which may facilitate identification of disease-associated genes and therapies for corneal ectasias. TRANSLATIONAL RELEVANCE: Local genetic covariance analysis enables the identification of associated genes and therapeutic targets for corneal ectatic disease.
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spelling pubmed-104248032023-08-15 Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits Cousins, Henry C. Cousins, Clara C. Valluru, Girish Altman, Russ B. Liu, Yutao Pasquale, Louis R. Ahmad, Sumayya Transl Vis Sci Technol Cornea & External Disease PURPOSE: The genetic architecture of corneal dysfunction remains poorly understood. Epidemiological and clinical evidence suggests a relationship between corneal structural features and anthropometric measures. We used global and local genetic similarity analysis to identify genomic features that may underlie structural corneal dysfunction. METHODS: We assembled genome-wide association study summary statistics for corneal features (central corneal thickness, corneal hysteresis [CH], corneal resistance factor [CRF], and the 3 mm index of keratometry) and anthropometric traits (body mass index, weight, and height) in Europeans. We calculated global genetic correlations (r(g)) between traits using linkage disequilibrium (LD) score regression and local genetic covariance using ρ-HESS, which partitions the genome and performs regression with LD regions. Finally, we identified genes located within regions of significant genetic covariance and analyzed patterns of tissue expression and pathway enrichment. RESULTS: Global LD score regression revealed significant negative correlations between height and both CH (r(g) = −0.12; P = 2.0 × 10(−7)) and CRF (r(g) = −0.11; P = 6.9 × 10(−7)). Local analysis revealed 68 genomic regions exhibiting significant local genetic covariance between CRF and height, containing 2874 unique genes. Pathway analysis of genes in regions with significant local r(g) revealed enrichment among signaling pathways with known keratoconus associations, including cadherin and Wnt signaling, as well as enrichment of genes modulated by copper and zinc ions. CONCLUSIONS: Corneal biophysical parameters and height share a common genomic architecture, which may facilitate identification of disease-associated genes and therapies for corneal ectasias. TRANSLATIONAL RELEVANCE: Local genetic covariance analysis enables the identification of associated genes and therapeutic targets for corneal ectatic disease. The Association for Research in Vision and Ophthalmology 2023-08-10 /pmc/articles/PMC10424803/ /pubmed/37561511 http://dx.doi.org/10.1167/tvst.12.8.8 Text en Copyright 2023 The Authors https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License.
spellingShingle Cornea & External Disease
Cousins, Henry C.
Cousins, Clara C.
Valluru, Girish
Altman, Russ B.
Liu, Yutao
Pasquale, Louis R.
Ahmad, Sumayya
Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits
title Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits
title_full Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits
title_fullStr Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits
title_full_unstemmed Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits
title_short Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits
title_sort genetic correlations among corneal biophysical parameters and anthropometric traits
topic Cornea & External Disease
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10424803/
https://www.ncbi.nlm.nih.gov/pubmed/37561511
http://dx.doi.org/10.1167/tvst.12.8.8
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