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Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits
PURPOSE: The genetic architecture of corneal dysfunction remains poorly understood. Epidemiological and clinical evidence suggests a relationship between corneal structural features and anthropometric measures. We used global and local genetic similarity analysis to identify genomic features that ma...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Association for Research in Vision and Ophthalmology
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10424803/ https://www.ncbi.nlm.nih.gov/pubmed/37561511 http://dx.doi.org/10.1167/tvst.12.8.8 |
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author | Cousins, Henry C. Cousins, Clara C. Valluru, Girish Altman, Russ B. Liu, Yutao Pasquale, Louis R. Ahmad, Sumayya |
author_facet | Cousins, Henry C. Cousins, Clara C. Valluru, Girish Altman, Russ B. Liu, Yutao Pasquale, Louis R. Ahmad, Sumayya |
author_sort | Cousins, Henry C. |
collection | PubMed |
description | PURPOSE: The genetic architecture of corneal dysfunction remains poorly understood. Epidemiological and clinical evidence suggests a relationship between corneal structural features and anthropometric measures. We used global and local genetic similarity analysis to identify genomic features that may underlie structural corneal dysfunction. METHODS: We assembled genome-wide association study summary statistics for corneal features (central corneal thickness, corneal hysteresis [CH], corneal resistance factor [CRF], and the 3 mm index of keratometry) and anthropometric traits (body mass index, weight, and height) in Europeans. We calculated global genetic correlations (r(g)) between traits using linkage disequilibrium (LD) score regression and local genetic covariance using ρ-HESS, which partitions the genome and performs regression with LD regions. Finally, we identified genes located within regions of significant genetic covariance and analyzed patterns of tissue expression and pathway enrichment. RESULTS: Global LD score regression revealed significant negative correlations between height and both CH (r(g) = −0.12; P = 2.0 × 10(−7)) and CRF (r(g) = −0.11; P = 6.9 × 10(−7)). Local analysis revealed 68 genomic regions exhibiting significant local genetic covariance between CRF and height, containing 2874 unique genes. Pathway analysis of genes in regions with significant local r(g) revealed enrichment among signaling pathways with known keratoconus associations, including cadherin and Wnt signaling, as well as enrichment of genes modulated by copper and zinc ions. CONCLUSIONS: Corneal biophysical parameters and height share a common genomic architecture, which may facilitate identification of disease-associated genes and therapies for corneal ectasias. TRANSLATIONAL RELEVANCE: Local genetic covariance analysis enables the identification of associated genes and therapeutic targets for corneal ectatic disease. |
format | Online Article Text |
id | pubmed-10424803 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Association for Research in Vision and Ophthalmology |
record_format | MEDLINE/PubMed |
spelling | pubmed-104248032023-08-15 Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits Cousins, Henry C. Cousins, Clara C. Valluru, Girish Altman, Russ B. Liu, Yutao Pasquale, Louis R. Ahmad, Sumayya Transl Vis Sci Technol Cornea & External Disease PURPOSE: The genetic architecture of corneal dysfunction remains poorly understood. Epidemiological and clinical evidence suggests a relationship between corneal structural features and anthropometric measures. We used global and local genetic similarity analysis to identify genomic features that may underlie structural corneal dysfunction. METHODS: We assembled genome-wide association study summary statistics for corneal features (central corneal thickness, corneal hysteresis [CH], corneal resistance factor [CRF], and the 3 mm index of keratometry) and anthropometric traits (body mass index, weight, and height) in Europeans. We calculated global genetic correlations (r(g)) between traits using linkage disequilibrium (LD) score regression and local genetic covariance using ρ-HESS, which partitions the genome and performs regression with LD regions. Finally, we identified genes located within regions of significant genetic covariance and analyzed patterns of tissue expression and pathway enrichment. RESULTS: Global LD score regression revealed significant negative correlations between height and both CH (r(g) = −0.12; P = 2.0 × 10(−7)) and CRF (r(g) = −0.11; P = 6.9 × 10(−7)). Local analysis revealed 68 genomic regions exhibiting significant local genetic covariance between CRF and height, containing 2874 unique genes. Pathway analysis of genes in regions with significant local r(g) revealed enrichment among signaling pathways with known keratoconus associations, including cadherin and Wnt signaling, as well as enrichment of genes modulated by copper and zinc ions. CONCLUSIONS: Corneal biophysical parameters and height share a common genomic architecture, which may facilitate identification of disease-associated genes and therapies for corneal ectasias. TRANSLATIONAL RELEVANCE: Local genetic covariance analysis enables the identification of associated genes and therapeutic targets for corneal ectatic disease. The Association for Research in Vision and Ophthalmology 2023-08-10 /pmc/articles/PMC10424803/ /pubmed/37561511 http://dx.doi.org/10.1167/tvst.12.8.8 Text en Copyright 2023 The Authors https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License. |
spellingShingle | Cornea & External Disease Cousins, Henry C. Cousins, Clara C. Valluru, Girish Altman, Russ B. Liu, Yutao Pasquale, Louis R. Ahmad, Sumayya Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits |
title | Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits |
title_full | Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits |
title_fullStr | Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits |
title_full_unstemmed | Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits |
title_short | Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric Traits |
title_sort | genetic correlations among corneal biophysical parameters and anthropometric traits |
topic | Cornea & External Disease |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10424803/ https://www.ncbi.nlm.nih.gov/pubmed/37561511 http://dx.doi.org/10.1167/tvst.12.8.8 |
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