Cargando…

ggpicrust2: an R package for PICRUSt2 predicted functional profile analysis and visualization

SUMMARY: Microbiome research is now moving beyond the compositional analysis of microbial taxa in a sample. Increasing evidence from large human microbiome studies suggests that functional consequences of changes in the intestinal microbiome may provide more power for studying their impact on inflam...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yang, Chen, Mai, Jiahao, Cao, Xuan, Burberry, Aaron, Cominelli, Fabio, Zhang, Liangliang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2023
Materias:	Applications Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10425198/ https://www.ncbi.nlm.nih.gov/pubmed/37527009 http://dx.doi.org/10.1093/bioinformatics/btad470

Ejemplares similares

ggtranscript: an R package for the visualization and interpretation of transcript isoforms using ggplot2
por: Gustavsson, Emil K, et al.
Publicado: (2022)

spiralize: an R package for visualizing data on spirals
por: Gu, Zuguang, et al.
Publicado: (2021)

CCPlotR: an R package for the visualization of cell–cell interactions
por: Ennis, Sarah, et al.
Publicado: (2023)

treeheatr: an R package for interpretable decision tree visualizations
por: Le, Trang T, et al.
Publicado: (2020)

UpSetR: an R package for the visualization of intersecting sets and their properties
por: Conway, Jake R, et al.
Publicado: (2017)

SPADEVizR: an R package for visualization, analysis and integration of SPADE results
por: Gautreau, Guillaume, et al.
Publicado: (2017)

MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities
por: Reeder, Janina, et al.
Publicado: (2020)

Pathview: an R/Bioconductor package for pathway-based data integration and visualization
por: Luo, Weijun, et al.
Publicado: (2013)

poRe: an R package for the visualization and analysis of nanopore sequencing data
por: Watson, Mick, et al.
Publicado: (2015)

dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering
por: Galili, Tal
Publicado: (2015)

cerebroViz: an R package for anatomical visualization of spatiotemporal brain data
por: Bahl, Ethan, et al.
Publicado: (2017)

TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data
por: Lim, Jae Hyun, et al.
Publicado: (2017)

cytomapper: an R/Bioconductor package for visualization of highly multiplexed imaging data
por: Eling, Nils, et al.
Publicado: (2020)

bubbleHeatmap: an R package for visualization of Nightingale Health metabolomics datasets
por: Boxall, Ruth, et al.
Publicado: (2023)

crosshap: R package for local haplotype visualization for trait association analysis
por: Marsh, Jacob I, et al.
Publicado: (2023)

aPEAR: an R package for autonomous visualization of pathway enrichment networks
por: Kerseviciute, Ieva, et al.
Publicado: (2023)

BodyMapR: an R package and Shiny application designed to generate anatomical visualizations of cancer lesions
por: Miller, David M, et al.
Publicado: (2022)

viRome: an R package for the visualization and analysis of viral small RNA sequence datasets
por: Watson, Mick, et al.
Publicado: (2013)

CellWalkR: an R package for integrating and visualizing single-cell and bulk data to resolve regulatory elements
por: Przytycki, Pawel F, et al.
Publicado: (2022)

psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes
por: Gutiérrez-Sacristán, Alba, et al.
Publicado: (2017)

ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles
por: Silva, Tiago C, et al.
Publicado: (2019)

linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type
por: Kalinka, Alex T., et al.
Publicado: (2011)

spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data
por: Creed, Jordan H, et al.
Publicado: (2021)

EnrichIntersect: an R package for custom set enrichment analysis and interactive visualization of intersecting sets
por: Zhao, Zhi, et al.
Publicado: (2022)

StoryboardR: an R package and Shiny application designed to visualize real-world data from clinical patient registries
por: Miller, David M, et al.
Publicado: (2023)

Repitools: an R package for the analysis of enrichment-based epigenomic data
por: Statham, Aaron L., et al.
Publicado: (2010)

syntenyPlotteR: a user-friendly R package to visualize genome synteny, ideal for both experienced and novice bioinformaticians
por: Quigley, Sarah, et al.
Publicado: (2023)

MethylMix 2.0: an R package for identifying DNA methylation genes
por: Cedoz, Pierre-Louis, et al.
Publicado: (2018)

miRspongeR 2.0: an enhanced R package for exploring miRNA sponge regulation
por: Zhang, Junpeng, et al.
Publicado: (2022)

An R package for ensemble learning stacking
por: Nukui, Taichi, et al.
Publicado: (2023)

DEUS: an R package for accurate small RNA profiling based on differential expression of unique sequences
por: Jeske, Tim, et al.
Publicado: (2019)

InterMineR: an R package for InterMine databases
por: Kyritsis, Konstantinos A, et al.
Publicado: (2019)

rtracklayer: an R package for interfacing with genome browsers
por: Lawrence, Michael, et al.
Publicado: (2009)

graphkernels: R and Python packages for graph comparison
por: Sugiyama, Mahito, et al.
Publicado: (2018)

UMI4Cats: an R package to analyze chromatin contact profiles obtained by UMI-4C
por: Ramos-Rodríguez, Mireia, et al.
Publicado: (2021)

integrOmics: an R package to unravel relationships between two omics datasets
por: Lê Cao, Kim-Anh, et al.
Publicado: (2009)

Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data
por: Wang, Bin, et al.
Publicado: (2015)

i2d: an R package for simulating data from images and the implications in biomedical research
por: Liang, Xiaoyu, et al.
Publicado: (2020)

gep2pep: a bioconductor package for the creation and analysis of pathway-based expression profiles
por: Napolitano, Farancesco, et al.
Publicado: (2020)

peakPantheR, an R package for large-scale targeted extraction and integration of annotated metabolic features in LC–MS profiling datasets
por: Wolfer, Arnaud M, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_b9aboelie31d1jk7th3l6r2hb5