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A dataset and template for assessing the ecological status of marine sediments and waters, based on microbial taxa

Microbes have often been overlooked as indicators of how the ecological status is affected by human pressures. Recently, the biotic index microgAMBI was proposed to assess the status of marine sediments and waters, and it has been tested under different pressures and biogeographical areas. This inde...

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Detalles Bibliográficos
Autor principal: Borja, Angel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: GigaScience Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10427998/
https://www.ncbi.nlm.nih.gov/pubmed/37593688
http://dx.doi.org/10.46471/gigabyte.86
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author Borja, Angel
author_facet Borja, Angel
author_sort Borja, Angel
collection PubMed
description Microbes have often been overlooked as indicators of how the ecological status is affected by human pressures. Recently, the biotic index microgAMBI was proposed to assess the status of marine sediments and waters, and it has been tested under different pressures and biogeographical areas. This index is based on the assignation of microbial taxa to one of two ecological groups: sensitive or tolerant to pollution or disturbance. The resulting taxa list has grown significantly since its first publication. Given the growing use of microgAMBI, it is crucial to make it more FAIR: Findable, Accessible, Interoperable and Reusable. Hence, this work provides the calculation template, the updated taxa list (1,974 taxa currently), and instructions on how to access and use them for assessing marine microbial ecological status.
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spelling pubmed-104279982023-08-17 A dataset and template for assessing the ecological status of marine sediments and waters, based on microbial taxa Borja, Angel GigaByte Data Release Microbes have often been overlooked as indicators of how the ecological status is affected by human pressures. Recently, the biotic index microgAMBI was proposed to assess the status of marine sediments and waters, and it has been tested under different pressures and biogeographical areas. This index is based on the assignation of microbial taxa to one of two ecological groups: sensitive or tolerant to pollution or disturbance. The resulting taxa list has grown significantly since its first publication. Given the growing use of microgAMBI, it is crucial to make it more FAIR: Findable, Accessible, Interoperable and Reusable. Hence, this work provides the calculation template, the updated taxa list (1,974 taxa currently), and instructions on how to access and use them for assessing marine microbial ecological status. GigaScience Press 2023-08-14 /pmc/articles/PMC10427998/ /pubmed/37593688 http://dx.doi.org/10.46471/gigabyte.86 Text en © The Author(s) 2023. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Release
Borja, Angel
A dataset and template for assessing the ecological status of marine sediments and waters, based on microbial taxa
title A dataset and template for assessing the ecological status of marine sediments and waters, based on microbial taxa
title_full A dataset and template for assessing the ecological status of marine sediments and waters, based on microbial taxa
title_fullStr A dataset and template for assessing the ecological status of marine sediments and waters, based on microbial taxa
title_full_unstemmed A dataset and template for assessing the ecological status of marine sediments and waters, based on microbial taxa
title_short A dataset and template for assessing the ecological status of marine sediments and waters, based on microbial taxa
title_sort dataset and template for assessing the ecological status of marine sediments and waters, based on microbial taxa
topic Data Release
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10427998/
https://www.ncbi.nlm.nih.gov/pubmed/37593688
http://dx.doi.org/10.46471/gigabyte.86
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