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DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine

[Image: see text] Traditional Chinese medicine (TCM) not only maintains the health of Asian people but also provides a great resource of active natural products for modern drug development. Herein, we developed a Database of Constituents Absorbed into the Blood and Metabolites of TCM (DCABM-TCM), th...

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Autores principales: Liu, Xinyue, Liu, Jinying, Fu, Bangze, Chen, Ruzhen, Jiang, Jianzhou, Chen, He, Li, Runa, Xing, Lin, Yuan, Liying, Chen, Xuetai, Zhang, Jing, Li, Honglei, Guo, Shuzhen, Guo, Feifei, Guo, Jiachen, Liu, Yuan, Qi, Yaning, Yu, Biyue, Xu, Feng, Li, Dong, Liu, Zhongyang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10428213/
https://www.ncbi.nlm.nih.gov/pubmed/37486750
http://dx.doi.org/10.1021/acs.jcim.3c00365
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author Liu, Xinyue
Liu, Jinying
Fu, Bangze
Chen, Ruzhen
Jiang, Jianzhou
Chen, He
Li, Runa
Xing, Lin
Yuan, Liying
Chen, Xuetai
Zhang, Jing
Li, Honglei
Guo, Shuzhen
Guo, Feifei
Guo, Jiachen
Liu, Yuan
Qi, Yaning
Yu, Biyue
Xu, Feng
Li, Dong
Liu, Zhongyang
author_facet Liu, Xinyue
Liu, Jinying
Fu, Bangze
Chen, Ruzhen
Jiang, Jianzhou
Chen, He
Li, Runa
Xing, Lin
Yuan, Liying
Chen, Xuetai
Zhang, Jing
Li, Honglei
Guo, Shuzhen
Guo, Feifei
Guo, Jiachen
Liu, Yuan
Qi, Yaning
Yu, Biyue
Xu, Feng
Li, Dong
Liu, Zhongyang
author_sort Liu, Xinyue
collection PubMed
description [Image: see text] Traditional Chinese medicine (TCM) not only maintains the health of Asian people but also provides a great resource of active natural products for modern drug development. Herein, we developed a Database of Constituents Absorbed into the Blood and Metabolites of TCM (DCABM-TCM), the first database systematically collecting blood constituents of TCM prescriptions and herbs, including prototypes and metabolites experimentally detected in the blood, together with the corresponding detailed detection conditions through manual literature mining. The DCABM-TCM has collected 1816 blood constituents with chemical structures of 192 prescriptions and 194 herbs and integrated their related annotations, including physicochemical, absorption, distribution, metabolism, excretion, and toxicity properties, and associated targets, pathways, and diseases. Furthermore, the DCABM-TCM supported two blood constituent-based analysis functions, the network pharmacology analysis for TCM molecular mechanism elucidation, and the target/pathway/disease-based screening of candidate blood constituents, herbs, or prescriptions for TCM-based drug discovery. The DCABM-TCM is freely accessible at http://bionet.ncpsb.org.cn/dcabm-tcm/. The DCABM-TCM will contribute to the elucidation of effective constituents and molecular mechanism of TCMs and the discovery of TCM-derived drug-like compounds that are both bioactive and bioavailable.
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spelling pubmed-104282132023-08-17 DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine Liu, Xinyue Liu, Jinying Fu, Bangze Chen, Ruzhen Jiang, Jianzhou Chen, He Li, Runa Xing, Lin Yuan, Liying Chen, Xuetai Zhang, Jing Li, Honglei Guo, Shuzhen Guo, Feifei Guo, Jiachen Liu, Yuan Qi, Yaning Yu, Biyue Xu, Feng Li, Dong Liu, Zhongyang J Chem Inf Model [Image: see text] Traditional Chinese medicine (TCM) not only maintains the health of Asian people but also provides a great resource of active natural products for modern drug development. Herein, we developed a Database of Constituents Absorbed into the Blood and Metabolites of TCM (DCABM-TCM), the first database systematically collecting blood constituents of TCM prescriptions and herbs, including prototypes and metabolites experimentally detected in the blood, together with the corresponding detailed detection conditions through manual literature mining. The DCABM-TCM has collected 1816 blood constituents with chemical structures of 192 prescriptions and 194 herbs and integrated their related annotations, including physicochemical, absorption, distribution, metabolism, excretion, and toxicity properties, and associated targets, pathways, and diseases. Furthermore, the DCABM-TCM supported two blood constituent-based analysis functions, the network pharmacology analysis for TCM molecular mechanism elucidation, and the target/pathway/disease-based screening of candidate blood constituents, herbs, or prescriptions for TCM-based drug discovery. The DCABM-TCM is freely accessible at http://bionet.ncpsb.org.cn/dcabm-tcm/. The DCABM-TCM will contribute to the elucidation of effective constituents and molecular mechanism of TCMs and the discovery of TCM-derived drug-like compounds that are both bioactive and bioavailable. American Chemical Society 2023-07-24 /pmc/articles/PMC10428213/ /pubmed/37486750 http://dx.doi.org/10.1021/acs.jcim.3c00365 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Liu, Xinyue
Liu, Jinying
Fu, Bangze
Chen, Ruzhen
Jiang, Jianzhou
Chen, He
Li, Runa
Xing, Lin
Yuan, Liying
Chen, Xuetai
Zhang, Jing
Li, Honglei
Guo, Shuzhen
Guo, Feifei
Guo, Jiachen
Liu, Yuan
Qi, Yaning
Yu, Biyue
Xu, Feng
Li, Dong
Liu, Zhongyang
DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine
title DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine
title_full DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine
title_fullStr DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine
title_full_unstemmed DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine
title_short DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine
title_sort dcabm-tcm: a database of constituents absorbed into the blood and metabolites of traditional chinese medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10428213/
https://www.ncbi.nlm.nih.gov/pubmed/37486750
http://dx.doi.org/10.1021/acs.jcim.3c00365
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