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DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine
[Image: see text] Traditional Chinese medicine (TCM) not only maintains the health of Asian people but also provides a great resource of active natural products for modern drug development. Herein, we developed a Database of Constituents Absorbed into the Blood and Metabolites of TCM (DCABM-TCM), th...
Autores principales: | , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10428213/ https://www.ncbi.nlm.nih.gov/pubmed/37486750 http://dx.doi.org/10.1021/acs.jcim.3c00365 |
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author | Liu, Xinyue Liu, Jinying Fu, Bangze Chen, Ruzhen Jiang, Jianzhou Chen, He Li, Runa Xing, Lin Yuan, Liying Chen, Xuetai Zhang, Jing Li, Honglei Guo, Shuzhen Guo, Feifei Guo, Jiachen Liu, Yuan Qi, Yaning Yu, Biyue Xu, Feng Li, Dong Liu, Zhongyang |
author_facet | Liu, Xinyue Liu, Jinying Fu, Bangze Chen, Ruzhen Jiang, Jianzhou Chen, He Li, Runa Xing, Lin Yuan, Liying Chen, Xuetai Zhang, Jing Li, Honglei Guo, Shuzhen Guo, Feifei Guo, Jiachen Liu, Yuan Qi, Yaning Yu, Biyue Xu, Feng Li, Dong Liu, Zhongyang |
author_sort | Liu, Xinyue |
collection | PubMed |
description | [Image: see text] Traditional Chinese medicine (TCM) not only maintains the health of Asian people but also provides a great resource of active natural products for modern drug development. Herein, we developed a Database of Constituents Absorbed into the Blood and Metabolites of TCM (DCABM-TCM), the first database systematically collecting blood constituents of TCM prescriptions and herbs, including prototypes and metabolites experimentally detected in the blood, together with the corresponding detailed detection conditions through manual literature mining. The DCABM-TCM has collected 1816 blood constituents with chemical structures of 192 prescriptions and 194 herbs and integrated their related annotations, including physicochemical, absorption, distribution, metabolism, excretion, and toxicity properties, and associated targets, pathways, and diseases. Furthermore, the DCABM-TCM supported two blood constituent-based analysis functions, the network pharmacology analysis for TCM molecular mechanism elucidation, and the target/pathway/disease-based screening of candidate blood constituents, herbs, or prescriptions for TCM-based drug discovery. The DCABM-TCM is freely accessible at http://bionet.ncpsb.org.cn/dcabm-tcm/. The DCABM-TCM will contribute to the elucidation of effective constituents and molecular mechanism of TCMs and the discovery of TCM-derived drug-like compounds that are both bioactive and bioavailable. |
format | Online Article Text |
id | pubmed-10428213 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-104282132023-08-17 DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine Liu, Xinyue Liu, Jinying Fu, Bangze Chen, Ruzhen Jiang, Jianzhou Chen, He Li, Runa Xing, Lin Yuan, Liying Chen, Xuetai Zhang, Jing Li, Honglei Guo, Shuzhen Guo, Feifei Guo, Jiachen Liu, Yuan Qi, Yaning Yu, Biyue Xu, Feng Li, Dong Liu, Zhongyang J Chem Inf Model [Image: see text] Traditional Chinese medicine (TCM) not only maintains the health of Asian people but also provides a great resource of active natural products for modern drug development. Herein, we developed a Database of Constituents Absorbed into the Blood and Metabolites of TCM (DCABM-TCM), the first database systematically collecting blood constituents of TCM prescriptions and herbs, including prototypes and metabolites experimentally detected in the blood, together with the corresponding detailed detection conditions through manual literature mining. The DCABM-TCM has collected 1816 blood constituents with chemical structures of 192 prescriptions and 194 herbs and integrated their related annotations, including physicochemical, absorption, distribution, metabolism, excretion, and toxicity properties, and associated targets, pathways, and diseases. Furthermore, the DCABM-TCM supported two blood constituent-based analysis functions, the network pharmacology analysis for TCM molecular mechanism elucidation, and the target/pathway/disease-based screening of candidate blood constituents, herbs, or prescriptions for TCM-based drug discovery. The DCABM-TCM is freely accessible at http://bionet.ncpsb.org.cn/dcabm-tcm/. The DCABM-TCM will contribute to the elucidation of effective constituents and molecular mechanism of TCMs and the discovery of TCM-derived drug-like compounds that are both bioactive and bioavailable. American Chemical Society 2023-07-24 /pmc/articles/PMC10428213/ /pubmed/37486750 http://dx.doi.org/10.1021/acs.jcim.3c00365 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Liu, Xinyue Liu, Jinying Fu, Bangze Chen, Ruzhen Jiang, Jianzhou Chen, He Li, Runa Xing, Lin Yuan, Liying Chen, Xuetai Zhang, Jing Li, Honglei Guo, Shuzhen Guo, Feifei Guo, Jiachen Liu, Yuan Qi, Yaning Yu, Biyue Xu, Feng Li, Dong Liu, Zhongyang DCABM-TCM: A Database of Constituents Absorbed into the Blood and Metabolites of Traditional Chinese Medicine |
title | DCABM-TCM: A Database
of Constituents Absorbed into
the Blood and Metabolites of Traditional Chinese Medicine |
title_full | DCABM-TCM: A Database
of Constituents Absorbed into
the Blood and Metabolites of Traditional Chinese Medicine |
title_fullStr | DCABM-TCM: A Database
of Constituents Absorbed into
the Blood and Metabolites of Traditional Chinese Medicine |
title_full_unstemmed | DCABM-TCM: A Database
of Constituents Absorbed into
the Blood and Metabolites of Traditional Chinese Medicine |
title_short | DCABM-TCM: A Database
of Constituents Absorbed into
the Blood and Metabolites of Traditional Chinese Medicine |
title_sort | dcabm-tcm: a database
of constituents absorbed into
the blood and metabolites of traditional chinese medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10428213/ https://www.ncbi.nlm.nih.gov/pubmed/37486750 http://dx.doi.org/10.1021/acs.jcim.3c00365 |
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