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Dataset from RNAseq analysis of bud differentiation in Ficus carica
The presented data regards the transcriptome profiling and differential analysis with RNA-Seq approach with the following goals: de novo transcriptome assembly and genome annotation of Ficus carica and the differential expression analysis of parthenocarpic and non-partenocarpic varieties in order to...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10430147/ https://www.ncbi.nlm.nih.gov/pubmed/37593183 http://dx.doi.org/10.1016/j.dib.2023.109418 |
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author | Marcotuli, Ilaria Giove, Stefania Lucia Giancaspro, Angelica Gadaleta, Agata Ferrara, Giuseppe |
author_facet | Marcotuli, Ilaria Giove, Stefania Lucia Giancaspro, Angelica Gadaleta, Agata Ferrara, Giuseppe |
author_sort | Marcotuli, Ilaria |
collection | PubMed |
description | The presented data regards the transcriptome profiling and differential analysis with RNA-Seq approach with the following goals: de novo transcriptome assembly and genome annotation of Ficus carica and the differential expression analysis of parthenocarpic and non-partenocarpic varieties in order to identify candidate genes for the production of seedless fig. Two fig varieties Dottato and Petrelli and the caprifig were grown at the fig repository at the ‘P. Martucci’ experimental station in Valenzano (Bari) of University of Bari ‘Aldo Moro’. The data included: RNA-seq data obtained from fruits of parthenocarpic and non-parthenocarpic varieties, gene expression in the different genetic materials; genes up and down regulated. The data in this article support information presented in the research article “I. Marcotuli, A. Mazzeo, P. Colasuonno, R. Terzano, D. Nigro, C. Porfido, A. Tarantino, R. Aiese Cigliano, W. Sanseverino, A. Gadaleta, G. Ferrara, Fruit Development in Ficus carica L.: Morphological and Genetic Approaches to Fig Buds for an Evolution From Monoecy Toward Dioecy. Front. Plant Sci.(2020) 11:1208. doi: 10.3389/fpls.2020.01208 |
format | Online Article Text |
id | pubmed-10430147 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-104301472023-08-17 Dataset from RNAseq analysis of bud differentiation in Ficus carica Marcotuli, Ilaria Giove, Stefania Lucia Giancaspro, Angelica Gadaleta, Agata Ferrara, Giuseppe Data Brief Data Article The presented data regards the transcriptome profiling and differential analysis with RNA-Seq approach with the following goals: de novo transcriptome assembly and genome annotation of Ficus carica and the differential expression analysis of parthenocarpic and non-partenocarpic varieties in order to identify candidate genes for the production of seedless fig. Two fig varieties Dottato and Petrelli and the caprifig were grown at the fig repository at the ‘P. Martucci’ experimental station in Valenzano (Bari) of University of Bari ‘Aldo Moro’. The data included: RNA-seq data obtained from fruits of parthenocarpic and non-parthenocarpic varieties, gene expression in the different genetic materials; genes up and down regulated. The data in this article support information presented in the research article “I. Marcotuli, A. Mazzeo, P. Colasuonno, R. Terzano, D. Nigro, C. Porfido, A. Tarantino, R. Aiese Cigliano, W. Sanseverino, A. Gadaleta, G. Ferrara, Fruit Development in Ficus carica L.: Morphological and Genetic Approaches to Fig Buds for an Evolution From Monoecy Toward Dioecy. Front. Plant Sci.(2020) 11:1208. doi: 10.3389/fpls.2020.01208 Elsevier 2023-07-29 /pmc/articles/PMC10430147/ /pubmed/37593183 http://dx.doi.org/10.1016/j.dib.2023.109418 Text en https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Marcotuli, Ilaria Giove, Stefania Lucia Giancaspro, Angelica Gadaleta, Agata Ferrara, Giuseppe Dataset from RNAseq analysis of bud differentiation in Ficus carica |
title | Dataset from RNAseq analysis of bud differentiation in Ficus carica |
title_full | Dataset from RNAseq analysis of bud differentiation in Ficus carica |
title_fullStr | Dataset from RNAseq analysis of bud differentiation in Ficus carica |
title_full_unstemmed | Dataset from RNAseq analysis of bud differentiation in Ficus carica |
title_short | Dataset from RNAseq analysis of bud differentiation in Ficus carica |
title_sort | dataset from rnaseq analysis of bud differentiation in ficus carica |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10430147/ https://www.ncbi.nlm.nih.gov/pubmed/37593183 http://dx.doi.org/10.1016/j.dib.2023.109418 |
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