Cargando…

Abundant, diverse, unknown: Extreme species richness and turnover despite drastic undersampling in two closely placed tropical Malaise traps

Arthropods account for a large proportion of animal biomass and diversity in terrestrial systems, making them crucial organisms in our environments. However, still too little is known about the highly abundant and megadiverse groups that often make up the bulk of collected samples, especially in the...

Descripción completa

Detalles Bibliográficos
Autores principales: Chimeno, Caroline, Schmidt, Stefan, Cancian de Araujo, Bruno, Perez, Kate, von Rintelen, Thomas, Schmidt, Olga, Hamid, Hasmiandy, Pramesa Narakusumo, Raden, Balke, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10431641/
https://www.ncbi.nlm.nih.gov/pubmed/37585425
http://dx.doi.org/10.1371/journal.pone.0290173
_version_ 1785091251281854464
author Chimeno, Caroline
Schmidt, Stefan
Cancian de Araujo, Bruno
Perez, Kate
von Rintelen, Thomas
Schmidt, Olga
Hamid, Hasmiandy
Pramesa Narakusumo, Raden
Balke, Michael
author_facet Chimeno, Caroline
Schmidt, Stefan
Cancian de Araujo, Bruno
Perez, Kate
von Rintelen, Thomas
Schmidt, Olga
Hamid, Hasmiandy
Pramesa Narakusumo, Raden
Balke, Michael
author_sort Chimeno, Caroline
collection PubMed
description Arthropods account for a large proportion of animal biomass and diversity in terrestrial systems, making them crucial organisms in our environments. However, still too little is known about the highly abundant and megadiverse groups that often make up the bulk of collected samples, especially in the tropics. With molecular identification techniques ever more evolving, analysis of arthropod communities has accelerated. In our study, which was conducted within the Global Malaise trap Program (GMP) framework, we operated two closely placed Malaise traps in Padang, Sumatra, for three months. We analyzed the samples by DNA barcoding and sequenced a total of more than 70,000 insect specimens. For sequence clustering, we applied three different delimitation techniques, namely RESL, ASAP, and SpeciesIdentifier, which gave similar results. Despite our (very) limited sampling in time and space, our efforts recovered more than 10,000 BINs, of which the majority are associated with “dark taxa”. Further analysis indicates a drastic undersampling of both sampling sites, meaning that the true arthropod diversity at our sampling sites is even higher. Regardless of the close proximity of both Malaise traps (< 360 m), we discovered significantly distinct communities.
format Online
Article
Text
id pubmed-10431641
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-104316412023-08-17 Abundant, diverse, unknown: Extreme species richness and turnover despite drastic undersampling in two closely placed tropical Malaise traps Chimeno, Caroline Schmidt, Stefan Cancian de Araujo, Bruno Perez, Kate von Rintelen, Thomas Schmidt, Olga Hamid, Hasmiandy Pramesa Narakusumo, Raden Balke, Michael PLoS One Research Article Arthropods account for a large proportion of animal biomass and diversity in terrestrial systems, making them crucial organisms in our environments. However, still too little is known about the highly abundant and megadiverse groups that often make up the bulk of collected samples, especially in the tropics. With molecular identification techniques ever more evolving, analysis of arthropod communities has accelerated. In our study, which was conducted within the Global Malaise trap Program (GMP) framework, we operated two closely placed Malaise traps in Padang, Sumatra, for three months. We analyzed the samples by DNA barcoding and sequenced a total of more than 70,000 insect specimens. For sequence clustering, we applied three different delimitation techniques, namely RESL, ASAP, and SpeciesIdentifier, which gave similar results. Despite our (very) limited sampling in time and space, our efforts recovered more than 10,000 BINs, of which the majority are associated with “dark taxa”. Further analysis indicates a drastic undersampling of both sampling sites, meaning that the true arthropod diversity at our sampling sites is even higher. Regardless of the close proximity of both Malaise traps (< 360 m), we discovered significantly distinct communities. Public Library of Science 2023-08-16 /pmc/articles/PMC10431641/ /pubmed/37585425 http://dx.doi.org/10.1371/journal.pone.0290173 Text en © 2023 Chimeno et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Chimeno, Caroline
Schmidt, Stefan
Cancian de Araujo, Bruno
Perez, Kate
von Rintelen, Thomas
Schmidt, Olga
Hamid, Hasmiandy
Pramesa Narakusumo, Raden
Balke, Michael
Abundant, diverse, unknown: Extreme species richness and turnover despite drastic undersampling in two closely placed tropical Malaise traps
title Abundant, diverse, unknown: Extreme species richness and turnover despite drastic undersampling in two closely placed tropical Malaise traps
title_full Abundant, diverse, unknown: Extreme species richness and turnover despite drastic undersampling in two closely placed tropical Malaise traps
title_fullStr Abundant, diverse, unknown: Extreme species richness and turnover despite drastic undersampling in two closely placed tropical Malaise traps
title_full_unstemmed Abundant, diverse, unknown: Extreme species richness and turnover despite drastic undersampling in two closely placed tropical Malaise traps
title_short Abundant, diverse, unknown: Extreme species richness and turnover despite drastic undersampling in two closely placed tropical Malaise traps
title_sort abundant, diverse, unknown: extreme species richness and turnover despite drastic undersampling in two closely placed tropical malaise traps
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10431641/
https://www.ncbi.nlm.nih.gov/pubmed/37585425
http://dx.doi.org/10.1371/journal.pone.0290173
work_keys_str_mv AT chimenocaroline abundantdiverseunknownextremespeciesrichnessandturnoverdespitedrasticundersamplingintwocloselyplacedtropicalmalaisetraps
AT schmidtstefan abundantdiverseunknownextremespeciesrichnessandturnoverdespitedrasticundersamplingintwocloselyplacedtropicalmalaisetraps
AT canciandearaujobruno abundantdiverseunknownextremespeciesrichnessandturnoverdespitedrasticundersamplingintwocloselyplacedtropicalmalaisetraps
AT perezkate abundantdiverseunknownextremespeciesrichnessandturnoverdespitedrasticundersamplingintwocloselyplacedtropicalmalaisetraps
AT vonrintelenthomas abundantdiverseunknownextremespeciesrichnessandturnoverdespitedrasticundersamplingintwocloselyplacedtropicalmalaisetraps
AT schmidtolga abundantdiverseunknownextremespeciesrichnessandturnoverdespitedrasticundersamplingintwocloselyplacedtropicalmalaisetraps
AT hamidhasmiandy abundantdiverseunknownextremespeciesrichnessandturnoverdespitedrasticundersamplingintwocloselyplacedtropicalmalaisetraps
AT pramesanarakusumoraden abundantdiverseunknownextremespeciesrichnessandturnoverdespitedrasticundersamplingintwocloselyplacedtropicalmalaisetraps
AT balkemichael abundantdiverseunknownextremespeciesrichnessandturnoverdespitedrasticundersamplingintwocloselyplacedtropicalmalaisetraps