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Chromosome-level genome assembly of the caenogastropod snail Rapana venosa

The carnivorous gastropod Rapana venosa (Valenciennes, 1846) is one of the most notorious ecological invaders worldwide. Here, we present the first high-quality chromosome-scale reference R. venosa genome obtained via PacBio sequencing, Illumina paired-end sequencing, and high-throughput chromosome...

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Autores principales: Song, Hao, Li, Zhuoqing, Yang, Meijie, Shi, Pu, Yu, Zhenglin, Hu, Zhi, Zhou, Cong, Hu, Pengpeng, Zhang, Tao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10432487/
https://www.ncbi.nlm.nih.gov/pubmed/37587134
http://dx.doi.org/10.1038/s41597-023-02459-7
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author Song, Hao
Li, Zhuoqing
Yang, Meijie
Shi, Pu
Yu, Zhenglin
Hu, Zhi
Zhou, Cong
Hu, Pengpeng
Zhang, Tao
author_facet Song, Hao
Li, Zhuoqing
Yang, Meijie
Shi, Pu
Yu, Zhenglin
Hu, Zhi
Zhou, Cong
Hu, Pengpeng
Zhang, Tao
author_sort Song, Hao
collection PubMed
description The carnivorous gastropod Rapana venosa (Valenciennes, 1846) is one of the most notorious ecological invaders worldwide. Here, we present the first high-quality chromosome-scale reference R. venosa genome obtained via PacBio sequencing, Illumina paired-end sequencing, and high-throughput chromosome conformation capture scaffolding. The assembled genome has a size of 2.30 Gb, with a scaffold N50 length of 64.63 Mb, and is anchored to 35 chromosomes. It contains 29,649 protein-coding genes, 77.22% of which were functionally annotated. Given its high heterozygosity (1.41%) and large proportion of repeat sequences (57.72%), it is one of the most complex genome assemblies. This chromosome-level genome assembly of R. venosa is an important resource for understanding molluscan evolutionary adaption and provides a genetic basis for its biological invasion control.
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spelling pubmed-104324872023-08-18 Chromosome-level genome assembly of the caenogastropod snail Rapana venosa Song, Hao Li, Zhuoqing Yang, Meijie Shi, Pu Yu, Zhenglin Hu, Zhi Zhou, Cong Hu, Pengpeng Zhang, Tao Sci Data Data Descriptor The carnivorous gastropod Rapana venosa (Valenciennes, 1846) is one of the most notorious ecological invaders worldwide. Here, we present the first high-quality chromosome-scale reference R. venosa genome obtained via PacBio sequencing, Illumina paired-end sequencing, and high-throughput chromosome conformation capture scaffolding. The assembled genome has a size of 2.30 Gb, with a scaffold N50 length of 64.63 Mb, and is anchored to 35 chromosomes. It contains 29,649 protein-coding genes, 77.22% of which were functionally annotated. Given its high heterozygosity (1.41%) and large proportion of repeat sequences (57.72%), it is one of the most complex genome assemblies. This chromosome-level genome assembly of R. venosa is an important resource for understanding molluscan evolutionary adaption and provides a genetic basis for its biological invasion control. Nature Publishing Group UK 2023-08-16 /pmc/articles/PMC10432487/ /pubmed/37587134 http://dx.doi.org/10.1038/s41597-023-02459-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Song, Hao
Li, Zhuoqing
Yang, Meijie
Shi, Pu
Yu, Zhenglin
Hu, Zhi
Zhou, Cong
Hu, Pengpeng
Zhang, Tao
Chromosome-level genome assembly of the caenogastropod snail Rapana venosa
title Chromosome-level genome assembly of the caenogastropod snail Rapana venosa
title_full Chromosome-level genome assembly of the caenogastropod snail Rapana venosa
title_fullStr Chromosome-level genome assembly of the caenogastropod snail Rapana venosa
title_full_unstemmed Chromosome-level genome assembly of the caenogastropod snail Rapana venosa
title_short Chromosome-level genome assembly of the caenogastropod snail Rapana venosa
title_sort chromosome-level genome assembly of the caenogastropod snail rapana venosa
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10432487/
https://www.ncbi.nlm.nih.gov/pubmed/37587134
http://dx.doi.org/10.1038/s41597-023-02459-7
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