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Chromosome-level genome assembly of the caenogastropod snail Rapana venosa
The carnivorous gastropod Rapana venosa (Valenciennes, 1846) is one of the most notorious ecological invaders worldwide. Here, we present the first high-quality chromosome-scale reference R. venosa genome obtained via PacBio sequencing, Illumina paired-end sequencing, and high-throughput chromosome...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10432487/ https://www.ncbi.nlm.nih.gov/pubmed/37587134 http://dx.doi.org/10.1038/s41597-023-02459-7 |
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author | Song, Hao Li, Zhuoqing Yang, Meijie Shi, Pu Yu, Zhenglin Hu, Zhi Zhou, Cong Hu, Pengpeng Zhang, Tao |
author_facet | Song, Hao Li, Zhuoqing Yang, Meijie Shi, Pu Yu, Zhenglin Hu, Zhi Zhou, Cong Hu, Pengpeng Zhang, Tao |
author_sort | Song, Hao |
collection | PubMed |
description | The carnivorous gastropod Rapana venosa (Valenciennes, 1846) is one of the most notorious ecological invaders worldwide. Here, we present the first high-quality chromosome-scale reference R. venosa genome obtained via PacBio sequencing, Illumina paired-end sequencing, and high-throughput chromosome conformation capture scaffolding. The assembled genome has a size of 2.30 Gb, with a scaffold N50 length of 64.63 Mb, and is anchored to 35 chromosomes. It contains 29,649 protein-coding genes, 77.22% of which were functionally annotated. Given its high heterozygosity (1.41%) and large proportion of repeat sequences (57.72%), it is one of the most complex genome assemblies. This chromosome-level genome assembly of R. venosa is an important resource for understanding molluscan evolutionary adaption and provides a genetic basis for its biological invasion control. |
format | Online Article Text |
id | pubmed-10432487 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104324872023-08-18 Chromosome-level genome assembly of the caenogastropod snail Rapana venosa Song, Hao Li, Zhuoqing Yang, Meijie Shi, Pu Yu, Zhenglin Hu, Zhi Zhou, Cong Hu, Pengpeng Zhang, Tao Sci Data Data Descriptor The carnivorous gastropod Rapana venosa (Valenciennes, 1846) is one of the most notorious ecological invaders worldwide. Here, we present the first high-quality chromosome-scale reference R. venosa genome obtained via PacBio sequencing, Illumina paired-end sequencing, and high-throughput chromosome conformation capture scaffolding. The assembled genome has a size of 2.30 Gb, with a scaffold N50 length of 64.63 Mb, and is anchored to 35 chromosomes. It contains 29,649 protein-coding genes, 77.22% of which were functionally annotated. Given its high heterozygosity (1.41%) and large proportion of repeat sequences (57.72%), it is one of the most complex genome assemblies. This chromosome-level genome assembly of R. venosa is an important resource for understanding molluscan evolutionary adaption and provides a genetic basis for its biological invasion control. Nature Publishing Group UK 2023-08-16 /pmc/articles/PMC10432487/ /pubmed/37587134 http://dx.doi.org/10.1038/s41597-023-02459-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Song, Hao Li, Zhuoqing Yang, Meijie Shi, Pu Yu, Zhenglin Hu, Zhi Zhou, Cong Hu, Pengpeng Zhang, Tao Chromosome-level genome assembly of the caenogastropod snail Rapana venosa |
title | Chromosome-level genome assembly of the caenogastropod snail Rapana venosa |
title_full | Chromosome-level genome assembly of the caenogastropod snail Rapana venosa |
title_fullStr | Chromosome-level genome assembly of the caenogastropod snail Rapana venosa |
title_full_unstemmed | Chromosome-level genome assembly of the caenogastropod snail Rapana venosa |
title_short | Chromosome-level genome assembly of the caenogastropod snail Rapana venosa |
title_sort | chromosome-level genome assembly of the caenogastropod snail rapana venosa |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10432487/ https://www.ncbi.nlm.nih.gov/pubmed/37587134 http://dx.doi.org/10.1038/s41597-023-02459-7 |
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