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Decision trees for early prediction of inadequate immune response to coronavirus infections: a pilot study on COVID-19

INTRODUCTION: Few artificial intelligence models exist to predict severe forms of COVID-19. Most rely on post-infection laboratory data, hindering early treatment for high-risk individuals. METHODS: This study developed a machine learning model to predict inherent risk of severe symptoms after contr...

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Autores principales: Pisano, Fabio, Cannas, Barbara, Fanni, Alessandra, Pasella, Manuela, Canetto, Beatrice, Giglio, Sabrina Rita, Mocci, Stefano, Chessa, Luchino, Perra, Andrea, Littera, Roberto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10433226/
https://www.ncbi.nlm.nih.gov/pubmed/37601789
http://dx.doi.org/10.3389/fmed.2023.1230733
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author Pisano, Fabio
Cannas, Barbara
Fanni, Alessandra
Pasella, Manuela
Canetto, Beatrice
Giglio, Sabrina Rita
Mocci, Stefano
Chessa, Luchino
Perra, Andrea
Littera, Roberto
author_facet Pisano, Fabio
Cannas, Barbara
Fanni, Alessandra
Pasella, Manuela
Canetto, Beatrice
Giglio, Sabrina Rita
Mocci, Stefano
Chessa, Luchino
Perra, Andrea
Littera, Roberto
author_sort Pisano, Fabio
collection PubMed
description INTRODUCTION: Few artificial intelligence models exist to predict severe forms of COVID-19. Most rely on post-infection laboratory data, hindering early treatment for high-risk individuals. METHODS: This study developed a machine learning model to predict inherent risk of severe symptoms after contracting SARS-CoV-2. Using a Decision Tree trained on 153 Alpha variant patients, demographic, clinical and immunogenetic markers were considered. Model performance was assessed on Alpha and Delta variant datasets. Key risk factors included age, gender, absence of KIR2DS2 gene (alone or with HLA-C C1 group alleles), presence of 14-bp polymorphism in HLA-G gene, presence of KIR2DS5 gene, and presence of KIR telomeric region A/A. RESULTS: The model achieved 83.01% accuracy for Alpha variant and 78.57% for Delta variant, with True Positive Rates of 80.82 and 77.78%, and True Negative Rates of 85.00% and 79.17%, respectively. The model showed high sensitivity in identifying individuals at risk. DISCUSSION: The present study demonstrates the potential of AI algorithms, combined with demographic, epidemiologic, and immunogenetic data, in identifying individuals at high risk of severe COVID-19 and facilitating early treatment. Further studies are required for routine clinical integration.
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spelling pubmed-104332262023-08-18 Decision trees for early prediction of inadequate immune response to coronavirus infections: a pilot study on COVID-19 Pisano, Fabio Cannas, Barbara Fanni, Alessandra Pasella, Manuela Canetto, Beatrice Giglio, Sabrina Rita Mocci, Stefano Chessa, Luchino Perra, Andrea Littera, Roberto Front Med (Lausanne) Medicine INTRODUCTION: Few artificial intelligence models exist to predict severe forms of COVID-19. Most rely on post-infection laboratory data, hindering early treatment for high-risk individuals. METHODS: This study developed a machine learning model to predict inherent risk of severe symptoms after contracting SARS-CoV-2. Using a Decision Tree trained on 153 Alpha variant patients, demographic, clinical and immunogenetic markers were considered. Model performance was assessed on Alpha and Delta variant datasets. Key risk factors included age, gender, absence of KIR2DS2 gene (alone or with HLA-C C1 group alleles), presence of 14-bp polymorphism in HLA-G gene, presence of KIR2DS5 gene, and presence of KIR telomeric region A/A. RESULTS: The model achieved 83.01% accuracy for Alpha variant and 78.57% for Delta variant, with True Positive Rates of 80.82 and 77.78%, and True Negative Rates of 85.00% and 79.17%, respectively. The model showed high sensitivity in identifying individuals at risk. DISCUSSION: The present study demonstrates the potential of AI algorithms, combined with demographic, epidemiologic, and immunogenetic data, in identifying individuals at high risk of severe COVID-19 and facilitating early treatment. Further studies are required for routine clinical integration. Frontiers Media S.A. 2023-08-02 /pmc/articles/PMC10433226/ /pubmed/37601789 http://dx.doi.org/10.3389/fmed.2023.1230733 Text en Copyright © 2023 Pisano, Cannas, Fanni, Pasella, Canetto, Giglio, Mocci, Chessa, Perra and Littera. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Pisano, Fabio
Cannas, Barbara
Fanni, Alessandra
Pasella, Manuela
Canetto, Beatrice
Giglio, Sabrina Rita
Mocci, Stefano
Chessa, Luchino
Perra, Andrea
Littera, Roberto
Decision trees for early prediction of inadequate immune response to coronavirus infections: a pilot study on COVID-19
title Decision trees for early prediction of inadequate immune response to coronavirus infections: a pilot study on COVID-19
title_full Decision trees for early prediction of inadequate immune response to coronavirus infections: a pilot study on COVID-19
title_fullStr Decision trees for early prediction of inadequate immune response to coronavirus infections: a pilot study on COVID-19
title_full_unstemmed Decision trees for early prediction of inadequate immune response to coronavirus infections: a pilot study on COVID-19
title_short Decision trees for early prediction of inadequate immune response to coronavirus infections: a pilot study on COVID-19
title_sort decision trees for early prediction of inadequate immune response to coronavirus infections: a pilot study on covid-19
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10433226/
https://www.ncbi.nlm.nih.gov/pubmed/37601789
http://dx.doi.org/10.3389/fmed.2023.1230733
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