bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting

Most current Salmonella subtyping analyses rely on whole genome sequencing (WGS), which focuses on the high-resolution analysis of single genomes or multiple single genomes from the isolated colonies on microbiological agar plates. In this study, we introduce bioinformatics innovations for a metagen...

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Detalles Bibliográficos
Autores principales: Konganti, Kranti, Reed, Elizabeth, Mammel, Mark, Kayikcioglu, Tunc, Binet, Rachel, Jarvis, Karen, Ferreira, Christina M., Bell, Rebecca L., Zheng, Jie, Windsor, Amanda M., Ottesen, Andrea, Grim, Christopher J., Ramachandran, Padmini
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Microbiology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10434220/
https://www.ncbi.nlm.nih.gov/pubmed/37601366
http://dx.doi.org/10.3389/fmicb.2023.1200983

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