A standard for sharing spatial transcriptomics data

Spatial transcriptomic technologies have the potential to reveal critical relationships between the function of genes and cells and their spatial organization. Here, we provide a sharing model for spatial transcriptomics data with the aim of establishing a set of primary data and metadata needed to...

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Detalles Bibliográficos
Autores principales: Jackson, Kayla C., Pachter, Lior
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Commentary
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10435375/
https://www.ncbi.nlm.nih.gov/pubmed/37601972
http://dx.doi.org/10.1016/j.xgen.2023.100374
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author Jackson, Kayla C.
Pachter, Lior
author_facet Jackson, Kayla C.
Pachter, Lior
author_sort Jackson, Kayla C.
collection PubMed
description Spatial transcriptomic technologies have the potential to reveal critical relationships between the function of genes and cells and their spatial organization. Here, we provide a sharing model for spatial transcriptomics data with the aim of establishing a set of primary data and metadata needed to reproduce analyses and facilitate computational methods development.
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spelling pubmed-104353752023-08-19 A standard for sharing spatial transcriptomics data Jackson, Kayla C. Pachter, Lior Cell Genom Commentary Spatial transcriptomic technologies have the potential to reveal critical relationships between the function of genes and cells and their spatial organization. Here, we provide a sharing model for spatial transcriptomics data with the aim of establishing a set of primary data and metadata needed to reproduce analyses and facilitate computational methods development. Elsevier 2023-08-09 /pmc/articles/PMC10435375/ /pubmed/37601972 http://dx.doi.org/10.1016/j.xgen.2023.100374 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Commentary
Jackson, Kayla C.
Pachter, Lior
A standard for sharing spatial transcriptomics data
title A standard for sharing spatial transcriptomics data
title_full A standard for sharing spatial transcriptomics data
title_fullStr A standard for sharing spatial transcriptomics data
title_full_unstemmed A standard for sharing spatial transcriptomics data
title_short A standard for sharing spatial transcriptomics data
title_sort standard for sharing spatial transcriptomics data
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10435375/
https://www.ncbi.nlm.nih.gov/pubmed/37601972
http://dx.doi.org/10.1016/j.xgen.2023.100374
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