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SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers
Survival models exist to study relationships between biomarkers and treatment effects. Deep learning-powered survival models supersede the classical Cox proportional hazards (CoxPH) model, but substantial performance drops were observed on high-dimensional features because of irrelevant/redundant in...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10435962/ https://www.ncbi.nlm.nih.gov/pubmed/37602223 http://dx.doi.org/10.1016/j.patter.2023.100777 |
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author | Al-Tashi, Qasem Saad, Maliazurina B. Sheshadri, Ajay Wu, Carol C. Chang, Joe Y. Al-Lazikani, Bissan Gibbons, Christopher Vokes, Natalie I. Zhang, Jianjun Lee, J. Jack Heymach, John V. Jaffray, David Mirjalili, Seyedali Wu, Jia |
author_facet | Al-Tashi, Qasem Saad, Maliazurina B. Sheshadri, Ajay Wu, Carol C. Chang, Joe Y. Al-Lazikani, Bissan Gibbons, Christopher Vokes, Natalie I. Zhang, Jianjun Lee, J. Jack Heymach, John V. Jaffray, David Mirjalili, Seyedali Wu, Jia |
author_sort | Al-Tashi, Qasem |
collection | PubMed |
description | Survival models exist to study relationships between biomarkers and treatment effects. Deep learning-powered survival models supersede the classical Cox proportional hazards (CoxPH) model, but substantial performance drops were observed on high-dimensional features because of irrelevant/redundant information. To fill this gap, we proposed SwarmDeepSurv by integrating swarm intelligence algorithms with the deep survival model. Furthermore, four objective functions were designed to optimize prognostic prediction while regularizing selected feature numbers. When testing on multicenter sets (n = 1,058) of four different cancer types, SwarmDeepSurv was less prone to overfitting and achieved optimal patient risk stratification compared with popular survival modeling algorithms. Strikingly, SwarmDeepSurv selected different features compared with classical feature selection algorithms, including the least absolute shrinkage and selection operator (LASSO), with nearly no feature overlapping across these models. Taken together, SwarmDeepSurv offers an alternative approach to model relationships between radiomics features and survival endpoints, which can further extend to study other input data types including genomics. |
format | Online Article Text |
id | pubmed-10435962 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-104359622023-08-19 SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers Al-Tashi, Qasem Saad, Maliazurina B. Sheshadri, Ajay Wu, Carol C. Chang, Joe Y. Al-Lazikani, Bissan Gibbons, Christopher Vokes, Natalie I. Zhang, Jianjun Lee, J. Jack Heymach, John V. Jaffray, David Mirjalili, Seyedali Wu, Jia Patterns (N Y) Article Survival models exist to study relationships between biomarkers and treatment effects. Deep learning-powered survival models supersede the classical Cox proportional hazards (CoxPH) model, but substantial performance drops were observed on high-dimensional features because of irrelevant/redundant information. To fill this gap, we proposed SwarmDeepSurv by integrating swarm intelligence algorithms with the deep survival model. Furthermore, four objective functions were designed to optimize prognostic prediction while regularizing selected feature numbers. When testing on multicenter sets (n = 1,058) of four different cancer types, SwarmDeepSurv was less prone to overfitting and achieved optimal patient risk stratification compared with popular survival modeling algorithms. Strikingly, SwarmDeepSurv selected different features compared with classical feature selection algorithms, including the least absolute shrinkage and selection operator (LASSO), with nearly no feature overlapping across these models. Taken together, SwarmDeepSurv offers an alternative approach to model relationships between radiomics features and survival endpoints, which can further extend to study other input data types including genomics. Elsevier 2023-06-28 /pmc/articles/PMC10435962/ /pubmed/37602223 http://dx.doi.org/10.1016/j.patter.2023.100777 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Al-Tashi, Qasem Saad, Maliazurina B. Sheshadri, Ajay Wu, Carol C. Chang, Joe Y. Al-Lazikani, Bissan Gibbons, Christopher Vokes, Natalie I. Zhang, Jianjun Lee, J. Jack Heymach, John V. Jaffray, David Mirjalili, Seyedali Wu, Jia SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers |
title | SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers |
title_full | SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers |
title_fullStr | SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers |
title_full_unstemmed | SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers |
title_short | SwarmDeepSurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers |
title_sort | swarmdeepsurv: swarm intelligence advances deep survival network for prognostic radiomics signatures in four solid cancers |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10435962/ https://www.ncbi.nlm.nih.gov/pubmed/37602223 http://dx.doi.org/10.1016/j.patter.2023.100777 |
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