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Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients

Owing to their functional diversity in many cancers, long noncoding RNAs (lncRNAs) are receiving special attention. LncRNAs not only function as oncogenes or tumor suppressors by participating in various signaling pathways but also serve as predictive markers for various types of cancer, including a...

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Autores principales: Ge, Fangfang, Wang, Yulu, Sharma, Amit, Jaehde, Ulrich, Essler, Markus, Schmid, Matthias, Schmidt-Wolf, Ingo G. H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10436091/
https://www.ncbi.nlm.nih.gov/pubmed/37600655
http://dx.doi.org/10.3389/fgene.2023.1218276
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author Ge, Fangfang
Wang, Yulu
Sharma, Amit
Jaehde, Ulrich
Essler, Markus
Schmid, Matthias
Schmidt-Wolf, Ingo G. H.
author_facet Ge, Fangfang
Wang, Yulu
Sharma, Amit
Jaehde, Ulrich
Essler, Markus
Schmid, Matthias
Schmidt-Wolf, Ingo G. H.
author_sort Ge, Fangfang
collection PubMed
description Owing to their functional diversity in many cancers, long noncoding RNAs (lncRNAs) are receiving special attention. LncRNAs not only function as oncogenes or tumor suppressors by participating in various signaling pathways but also serve as predictive markers for various types of cancer, including acute myeloid leukemia (AML). Considering this, we investigated lncRNAs that may act as a mediator between two processes, i.e., heat shock proteins and ferroptosis, which appear to be closely related in tumorigenesis. Using a comprehensive bioinformatics approach, we identified four lncRNAs (AL138716.1, AC000120.1, AC004947.1, and LINC01547) with prognostic value in AML patients. Of interest, two of them (AC000120.1 and LINC01547) have already been reported to be AML-related, and AC004947.1 is considered to have oncogenic potential. In particular, the signature obtained showed a lower survival probability with high-risk patients, and vice versa. To our knowledge, this is the first predictive model of lncRNA that may correlate with the processes of heat shock proteins and ferroptosis in AML. Nevertheless, validation using patient samples is warranted.
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spelling pubmed-104360912023-08-19 Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients Ge, Fangfang Wang, Yulu Sharma, Amit Jaehde, Ulrich Essler, Markus Schmid, Matthias Schmidt-Wolf, Ingo G. H. Front Genet Genetics Owing to their functional diversity in many cancers, long noncoding RNAs (lncRNAs) are receiving special attention. LncRNAs not only function as oncogenes or tumor suppressors by participating in various signaling pathways but also serve as predictive markers for various types of cancer, including acute myeloid leukemia (AML). Considering this, we investigated lncRNAs that may act as a mediator between two processes, i.e., heat shock proteins and ferroptosis, which appear to be closely related in tumorigenesis. Using a comprehensive bioinformatics approach, we identified four lncRNAs (AL138716.1, AC000120.1, AC004947.1, and LINC01547) with prognostic value in AML patients. Of interest, two of them (AC000120.1 and LINC01547) have already been reported to be AML-related, and AC004947.1 is considered to have oncogenic potential. In particular, the signature obtained showed a lower survival probability with high-risk patients, and vice versa. To our knowledge, this is the first predictive model of lncRNA that may correlate with the processes of heat shock proteins and ferroptosis in AML. Nevertheless, validation using patient samples is warranted. Frontiers Media S.A. 2023-08-01 /pmc/articles/PMC10436091/ /pubmed/37600655 http://dx.doi.org/10.3389/fgene.2023.1218276 Text en Copyright © 2023 Ge, Wang, Sharma, Jaehde, Essler, Schmid and Schmidt-Wolf. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Ge, Fangfang
Wang, Yulu
Sharma, Amit
Jaehde, Ulrich
Essler, Markus
Schmid, Matthias
Schmidt-Wolf, Ingo G. H.
Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients
title Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients
title_full Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients
title_fullStr Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients
title_full_unstemmed Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients
title_short Computational analysis of heat shock proteins and ferroptosis-associated lncRNAs to predict prognosis in acute myeloid leukemia patients
title_sort computational analysis of heat shock proteins and ferroptosis-associated lncrnas to predict prognosis in acute myeloid leukemia patients
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10436091/
https://www.ncbi.nlm.nih.gov/pubmed/37600655
http://dx.doi.org/10.3389/fgene.2023.1218276
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