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DEVO: an ontology to assist with dermoscopic feature standardization

BACKGROUND: The utilization of dermoscopic analysis is becoming increasingly critical for diagnosing skin diseases by physicians and even artificial intelligence. With the expansion of dermoscopy, its vocabulary has proliferated, but the rapid evolution of the vocabulary of dermoscopy without standa...

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Autores principales: Zhang, Xinyuan, Lin, Rebecca Z., Amith, Muhammad “Tuan”, Wang, Cynthia, Light, Jeremy, Strickley, John, Tao, Cui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10436380/
https://www.ncbi.nlm.nih.gov/pubmed/37596573
http://dx.doi.org/10.1186/s12911-023-02251-y
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author Zhang, Xinyuan
Lin, Rebecca Z.
Amith, Muhammad “Tuan”
Wang, Cynthia
Light, Jeremy
Strickley, John
Tao, Cui
author_facet Zhang, Xinyuan
Lin, Rebecca Z.
Amith, Muhammad “Tuan”
Wang, Cynthia
Light, Jeremy
Strickley, John
Tao, Cui
author_sort Zhang, Xinyuan
collection PubMed
description BACKGROUND: The utilization of dermoscopic analysis is becoming increasingly critical for diagnosing skin diseases by physicians and even artificial intelligence. With the expansion of dermoscopy, its vocabulary has proliferated, but the rapid evolution of the vocabulary of dermoscopy without standardized control is counterproductive. We aimed to develop a domain-specific ontology to formally represent knowledge for certain dermoscopic features. METHODS: The first phase involved creating a fundamental-level ontology that covers the fundamental aspects and elements in describing visualizations, such as shapes and colors. The second phase involved creating a domain ontology that harnesses the fundamental-level ontology to formalize the definitions of dermoscopic metaphorical terms. RESULTS: The Dermoscopy Elements of Visuals Ontology (DEVO) contains 1047 classes, 47 object properties, and 16 data properties. It has a better semiotic score compared to similar ontologies of the same domain. Three human annotators also examined the consistency, complexity, and future application of the ontology. CONCLUSIONS: The proposed ontology was able to harness the definitions of metaphoric terms by decomposing them into their visual elements. Future applications include providing education for trainees and diagnostic support for dermatologists, with the goal of generating responses to queries about dermoscopic features and integrating these features to diagnose skin diseases. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12911-023-02251-y.
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spelling pubmed-104363802023-08-19 DEVO: an ontology to assist with dermoscopic feature standardization Zhang, Xinyuan Lin, Rebecca Z. Amith, Muhammad “Tuan” Wang, Cynthia Light, Jeremy Strickley, John Tao, Cui BMC Med Inform Decis Mak Research BACKGROUND: The utilization of dermoscopic analysis is becoming increasingly critical for diagnosing skin diseases by physicians and even artificial intelligence. With the expansion of dermoscopy, its vocabulary has proliferated, but the rapid evolution of the vocabulary of dermoscopy without standardized control is counterproductive. We aimed to develop a domain-specific ontology to formally represent knowledge for certain dermoscopic features. METHODS: The first phase involved creating a fundamental-level ontology that covers the fundamental aspects and elements in describing visualizations, such as shapes and colors. The second phase involved creating a domain ontology that harnesses the fundamental-level ontology to formalize the definitions of dermoscopic metaphorical terms. RESULTS: The Dermoscopy Elements of Visuals Ontology (DEVO) contains 1047 classes, 47 object properties, and 16 data properties. It has a better semiotic score compared to similar ontologies of the same domain. Three human annotators also examined the consistency, complexity, and future application of the ontology. CONCLUSIONS: The proposed ontology was able to harness the definitions of metaphoric terms by decomposing them into their visual elements. Future applications include providing education for trainees and diagnostic support for dermatologists, with the goal of generating responses to queries about dermoscopic features and integrating these features to diagnose skin diseases. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12911-023-02251-y. BioMed Central 2023-08-18 /pmc/articles/PMC10436380/ /pubmed/37596573 http://dx.doi.org/10.1186/s12911-023-02251-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Zhang, Xinyuan
Lin, Rebecca Z.
Amith, Muhammad “Tuan”
Wang, Cynthia
Light, Jeremy
Strickley, John
Tao, Cui
DEVO: an ontology to assist with dermoscopic feature standardization
title DEVO: an ontology to assist with dermoscopic feature standardization
title_full DEVO: an ontology to assist with dermoscopic feature standardization
title_fullStr DEVO: an ontology to assist with dermoscopic feature standardization
title_full_unstemmed DEVO: an ontology to assist with dermoscopic feature standardization
title_short DEVO: an ontology to assist with dermoscopic feature standardization
title_sort devo: an ontology to assist with dermoscopic feature standardization
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10436380/
https://www.ncbi.nlm.nih.gov/pubmed/37596573
http://dx.doi.org/10.1186/s12911-023-02251-y
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