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Computational modeling allows unsupervised classification of epileptic brain states across species
Current advances in epilepsy treatment aim to personalize and responsively adjust treatment parameters to overcome patient heterogeneity in treatment efficiency. For tailoring treatment to the individual and the current brain state, tools are required that help to identify the patient- and time-poin...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10439162/ https://www.ncbi.nlm.nih.gov/pubmed/37596382 http://dx.doi.org/10.1038/s41598-023-39867-z |
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author | Dallmer-Zerbe, Isa Jajcay, Nikola Chvojka, Jan Janca, Radek Jezdik, Petr Krsek, Pavel Marusic, Petr Jiruska, Premysl Hlinka, Jaroslav |
author_facet | Dallmer-Zerbe, Isa Jajcay, Nikola Chvojka, Jan Janca, Radek Jezdik, Petr Krsek, Pavel Marusic, Petr Jiruska, Premysl Hlinka, Jaroslav |
author_sort | Dallmer-Zerbe, Isa |
collection | PubMed |
description | Current advances in epilepsy treatment aim to personalize and responsively adjust treatment parameters to overcome patient heterogeneity in treatment efficiency. For tailoring treatment to the individual and the current brain state, tools are required that help to identify the patient- and time-point-specific parameters of epilepsy. Computational modeling has long proven its utility in gaining mechanistic insight. Recently, the technique has been introduced as a diagnostic tool to predict individual treatment outcomes. In this article, the Wendling model, an established computational model of epilepsy dynamics, is used to automatically classify epileptic brain states in intracranial EEG from patients (n = 4) and local field potential recordings from in vitro rat data (high-potassium model of epilepsy, n = 3). Five-second signal segments are classified to four types of brain state in epilepsy (interictal, preonset, onset, ictal) by comparing a vector of signal features for each data segment to four prototypical feature vectors obtained by Wendling model simulations. The classification result is validated against expert visual assessment. Model-driven brain state classification achieved a classification performance significantly above chance level (mean sensitivity 0.99 on model data, 0.77 on rat data, 0.56 on human data in a four-way classification task). Model-driven prototypes showed similarity with data-driven prototypes, which we obtained from real data for rats and humans. Our results indicate similar electrophysiological patterns of epileptic states in the human brain and the animal model that are well-reproduced by the computational model, and captured by a key set of signal features, enabling fully automated and unsupervised brain state classification in epilepsy. |
format | Online Article Text |
id | pubmed-10439162 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104391622023-08-20 Computational modeling allows unsupervised classification of epileptic brain states across species Dallmer-Zerbe, Isa Jajcay, Nikola Chvojka, Jan Janca, Radek Jezdik, Petr Krsek, Pavel Marusic, Petr Jiruska, Premysl Hlinka, Jaroslav Sci Rep Article Current advances in epilepsy treatment aim to personalize and responsively adjust treatment parameters to overcome patient heterogeneity in treatment efficiency. For tailoring treatment to the individual and the current brain state, tools are required that help to identify the patient- and time-point-specific parameters of epilepsy. Computational modeling has long proven its utility in gaining mechanistic insight. Recently, the technique has been introduced as a diagnostic tool to predict individual treatment outcomes. In this article, the Wendling model, an established computational model of epilepsy dynamics, is used to automatically classify epileptic brain states in intracranial EEG from patients (n = 4) and local field potential recordings from in vitro rat data (high-potassium model of epilepsy, n = 3). Five-second signal segments are classified to four types of brain state in epilepsy (interictal, preonset, onset, ictal) by comparing a vector of signal features for each data segment to four prototypical feature vectors obtained by Wendling model simulations. The classification result is validated against expert visual assessment. Model-driven brain state classification achieved a classification performance significantly above chance level (mean sensitivity 0.99 on model data, 0.77 on rat data, 0.56 on human data in a four-way classification task). Model-driven prototypes showed similarity with data-driven prototypes, which we obtained from real data for rats and humans. Our results indicate similar electrophysiological patterns of epileptic states in the human brain and the animal model that are well-reproduced by the computational model, and captured by a key set of signal features, enabling fully automated and unsupervised brain state classification in epilepsy. Nature Publishing Group UK 2023-08-18 /pmc/articles/PMC10439162/ /pubmed/37596382 http://dx.doi.org/10.1038/s41598-023-39867-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Dallmer-Zerbe, Isa Jajcay, Nikola Chvojka, Jan Janca, Radek Jezdik, Petr Krsek, Pavel Marusic, Petr Jiruska, Premysl Hlinka, Jaroslav Computational modeling allows unsupervised classification of epileptic brain states across species |
title | Computational modeling allows unsupervised classification of epileptic brain states across species |
title_full | Computational modeling allows unsupervised classification of epileptic brain states across species |
title_fullStr | Computational modeling allows unsupervised classification of epileptic brain states across species |
title_full_unstemmed | Computational modeling allows unsupervised classification of epileptic brain states across species |
title_short | Computational modeling allows unsupervised classification of epileptic brain states across species |
title_sort | computational modeling allows unsupervised classification of epileptic brain states across species |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10439162/ https://www.ncbi.nlm.nih.gov/pubmed/37596382 http://dx.doi.org/10.1038/s41598-023-39867-z |
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