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Cuproptosis‐related lncRNAs are correlated with tumour metabolism and immune microenvironment and predict prognosis in pancreatic cancer patients
Cuproptosis is a novel cell death pathway, and the regulatory mechanism in pancreatic cancer (PC) is unclear. The authors aimed to figure out whether cuproptosis‐related lncRNAs (CRLs) could predict prognosis in PC and the underlying mechanism. First, the prognostic model based on seven CRLs screene...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10439495/ https://www.ncbi.nlm.nih.gov/pubmed/37341253 http://dx.doi.org/10.1049/syb2.12068 |
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author | Wang, Yanling Ge, Weiyu Xue, Shengbai Cui, Jiujie Zhang, Xiaofei Mao, Tiebo Xu, Haiyan Li, Shumin Ma, Jingyu Yue, Ming Shentu, Daiyuan Wang, Liwei |
author_facet | Wang, Yanling Ge, Weiyu Xue, Shengbai Cui, Jiujie Zhang, Xiaofei Mao, Tiebo Xu, Haiyan Li, Shumin Ma, Jingyu Yue, Ming Shentu, Daiyuan Wang, Liwei |
author_sort | Wang, Yanling |
collection | PubMed |
description | Cuproptosis is a novel cell death pathway, and the regulatory mechanism in pancreatic cancer (PC) is unclear. The authors aimed to figure out whether cuproptosis‐related lncRNAs (CRLs) could predict prognosis in PC and the underlying mechanism. First, the prognostic model based on seven CRLs screened by the least absolute shrinkage and selection operator Cox analysis was constructed. Following this, the risk score was calculated for pancreatic cancer patients and divided patients into high and low‐risk groups. In our prognostic model, PC patients with higher risk scores had poorer outcomes. Based on several prognostic features, a predictive nomogram was established. Furthermore, the functional enrichment analysis of differentially expressed genes between risk groups was performed, indicating that endocrine and metabolic pathways were potential regulatory pathways between risk groups. TP53, KRAS, CDKN2A, and SMAD4 were dominant mutated genes in the high‐risk group and tumour mutational burden was positively correlated with the risk score. Finally, the tumour immune landscape indicated patients in the high‐risk group were more immunosuppressive than that in the low‐risk group, with lower infiltration of CD8+ T cells and higher M2 macrophages. Above all, CRLs can be applied to predict PC prognosis, which is closely correlated with the tumour metabolism and immune microenvironment. |
format | Online Article Text |
id | pubmed-10439495 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104394952023-08-20 Cuproptosis‐related lncRNAs are correlated with tumour metabolism and immune microenvironment and predict prognosis in pancreatic cancer patients Wang, Yanling Ge, Weiyu Xue, Shengbai Cui, Jiujie Zhang, Xiaofei Mao, Tiebo Xu, Haiyan Li, Shumin Ma, Jingyu Yue, Ming Shentu, Daiyuan Wang, Liwei IET Syst Biol Original Research Cuproptosis is a novel cell death pathway, and the regulatory mechanism in pancreatic cancer (PC) is unclear. The authors aimed to figure out whether cuproptosis‐related lncRNAs (CRLs) could predict prognosis in PC and the underlying mechanism. First, the prognostic model based on seven CRLs screened by the least absolute shrinkage and selection operator Cox analysis was constructed. Following this, the risk score was calculated for pancreatic cancer patients and divided patients into high and low‐risk groups. In our prognostic model, PC patients with higher risk scores had poorer outcomes. Based on several prognostic features, a predictive nomogram was established. Furthermore, the functional enrichment analysis of differentially expressed genes between risk groups was performed, indicating that endocrine and metabolic pathways were potential regulatory pathways between risk groups. TP53, KRAS, CDKN2A, and SMAD4 were dominant mutated genes in the high‐risk group and tumour mutational burden was positively correlated with the risk score. Finally, the tumour immune landscape indicated patients in the high‐risk group were more immunosuppressive than that in the low‐risk group, with lower infiltration of CD8+ T cells and higher M2 macrophages. Above all, CRLs can be applied to predict PC prognosis, which is closely correlated with the tumour metabolism and immune microenvironment. John Wiley and Sons Inc. 2023-06-21 /pmc/articles/PMC10439495/ /pubmed/37341253 http://dx.doi.org/10.1049/syb2.12068 Text en © 2023 The Authors. IET Systems Biology published by John Wiley & Sons Ltd on behalf of The Institution of Engineering and Technology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Original Research Wang, Yanling Ge, Weiyu Xue, Shengbai Cui, Jiujie Zhang, Xiaofei Mao, Tiebo Xu, Haiyan Li, Shumin Ma, Jingyu Yue, Ming Shentu, Daiyuan Wang, Liwei Cuproptosis‐related lncRNAs are correlated with tumour metabolism and immune microenvironment and predict prognosis in pancreatic cancer patients |
title | Cuproptosis‐related lncRNAs are correlated with tumour metabolism and immune microenvironment and predict prognosis in pancreatic cancer patients |
title_full | Cuproptosis‐related lncRNAs are correlated with tumour metabolism and immune microenvironment and predict prognosis in pancreatic cancer patients |
title_fullStr | Cuproptosis‐related lncRNAs are correlated with tumour metabolism and immune microenvironment and predict prognosis in pancreatic cancer patients |
title_full_unstemmed | Cuproptosis‐related lncRNAs are correlated with tumour metabolism and immune microenvironment and predict prognosis in pancreatic cancer patients |
title_short | Cuproptosis‐related lncRNAs are correlated with tumour metabolism and immune microenvironment and predict prognosis in pancreatic cancer patients |
title_sort | cuproptosis‐related lncrnas are correlated with tumour metabolism and immune microenvironment and predict prognosis in pancreatic cancer patients |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10439495/ https://www.ncbi.nlm.nih.gov/pubmed/37341253 http://dx.doi.org/10.1049/syb2.12068 |
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