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A task-unified network with transformer and spatial–temporal convolution for left ventricular quantification
Quantification of the cardiac function is vital for diagnosing and curing the cardiovascular diseases. Left ventricular function measurement is the most commonly used measure to evaluate the function of cardiac in clinical practice, how to improve the accuracy of left ventricular quantitative assess...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10439898/ https://www.ncbi.nlm.nih.gov/pubmed/37598235 http://dx.doi.org/10.1038/s41598-023-40841-y |
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author | Li, Dapeng Peng, Yanjun Sun, Jindong Guo, Yanfei |
author_facet | Li, Dapeng Peng, Yanjun Sun, Jindong Guo, Yanfei |
author_sort | Li, Dapeng |
collection | PubMed |
description | Quantification of the cardiac function is vital for diagnosing and curing the cardiovascular diseases. Left ventricular function measurement is the most commonly used measure to evaluate the function of cardiac in clinical practice, how to improve the accuracy of left ventricular quantitative assessment results has always been the subject of research by medical researchers. Although considerable efforts have been put forward to measure the left ventricle (LV) automatically using deep learning methods, the accurate quantification is yet a challenge work as a result of the changeable anatomy structure of heart in the systolic diastolic cycle. Besides, most methods used direct regression method which lacks of visual based analysis. In this work, a deep learning segmentation and regression task-unified network with transformer and spatial–temporal convolution is proposed to segment and quantify the LV simultaneously. The segmentation module leverages a U-Net like 3D Transformer model to predict the contour of three anatomy structures, while the regression module learns spatial–temporal representations from the original images and the reconstruct feature map from segmentation path to estimate the finally desired quantification metrics. Furthermore, we employ a joint task loss function to train the two module networks. Our framework is evaluated on the MICCAI 2017 Left Ventricle Full Quantification Challenge dataset. The results of experiments demonstrate the effectiveness of our framework, which achieves competitive cardiac quantification metric results and at the same time produces visualized segmentation results that are conducive to later analysis. |
format | Online Article Text |
id | pubmed-10439898 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104398982023-08-21 A task-unified network with transformer and spatial–temporal convolution for left ventricular quantification Li, Dapeng Peng, Yanjun Sun, Jindong Guo, Yanfei Sci Rep Article Quantification of the cardiac function is vital for diagnosing and curing the cardiovascular diseases. Left ventricular function measurement is the most commonly used measure to evaluate the function of cardiac in clinical practice, how to improve the accuracy of left ventricular quantitative assessment results has always been the subject of research by medical researchers. Although considerable efforts have been put forward to measure the left ventricle (LV) automatically using deep learning methods, the accurate quantification is yet a challenge work as a result of the changeable anatomy structure of heart in the systolic diastolic cycle. Besides, most methods used direct regression method which lacks of visual based analysis. In this work, a deep learning segmentation and regression task-unified network with transformer and spatial–temporal convolution is proposed to segment and quantify the LV simultaneously. The segmentation module leverages a U-Net like 3D Transformer model to predict the contour of three anatomy structures, while the regression module learns spatial–temporal representations from the original images and the reconstruct feature map from segmentation path to estimate the finally desired quantification metrics. Furthermore, we employ a joint task loss function to train the two module networks. Our framework is evaluated on the MICCAI 2017 Left Ventricle Full Quantification Challenge dataset. The results of experiments demonstrate the effectiveness of our framework, which achieves competitive cardiac quantification metric results and at the same time produces visualized segmentation results that are conducive to later analysis. Nature Publishing Group UK 2023-08-19 /pmc/articles/PMC10439898/ /pubmed/37598235 http://dx.doi.org/10.1038/s41598-023-40841-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Li, Dapeng Peng, Yanjun Sun, Jindong Guo, Yanfei A task-unified network with transformer and spatial–temporal convolution for left ventricular quantification |
title | A task-unified network with transformer and spatial–temporal convolution for left ventricular quantification |
title_full | A task-unified network with transformer and spatial–temporal convolution for left ventricular quantification |
title_fullStr | A task-unified network with transformer and spatial–temporal convolution for left ventricular quantification |
title_full_unstemmed | A task-unified network with transformer and spatial–temporal convolution for left ventricular quantification |
title_short | A task-unified network with transformer and spatial–temporal convolution for left ventricular quantification |
title_sort | task-unified network with transformer and spatial–temporal convolution for left ventricular quantification |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10439898/ https://www.ncbi.nlm.nih.gov/pubmed/37598235 http://dx.doi.org/10.1038/s41598-023-40841-y |
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