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Curcumin Chalcone Derivatives Database (CCDD): a Python framework for natural compound derivatives database

We built the Curcumin Chalcone Derivatives Database (CCDD) to enable the effective virtual screening of highly potent curcumin and its analogs. The two-dimensional (2D) structures were drawn using the ChemBioOffice package and converted to 3D structures using Discovery Studio Visualizer V 2021 (DS)....

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Autores principales: Rampogu, Shailima, Balasubramaniyam, Thananjeyan, Lee, Joon-Hwa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10440061/
https://www.ncbi.nlm.nih.gov/pubmed/37605747
http://dx.doi.org/10.7717/peerj.15885
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author Rampogu, Shailima
Balasubramaniyam, Thananjeyan
Lee, Joon-Hwa
author_facet Rampogu, Shailima
Balasubramaniyam, Thananjeyan
Lee, Joon-Hwa
author_sort Rampogu, Shailima
collection PubMed
description We built the Curcumin Chalcone Derivatives Database (CCDD) to enable the effective virtual screening of highly potent curcumin and its analogs. The two-dimensional (2D) structures were drawn using the ChemBioOffice package and converted to 3D structures using Discovery Studio Visualizer V 2021 (DS). The database was built using different Python modules. For the 3D structures, different Python packages were used to obtain the data frame of compounds. This framework is also used to visualize the compounds. The webserver enables the users to screen the compounds according to Lipinski’s rule of five. The structures can be downloaded in .sdf and .mol format. The data frame (df) can be downloaded in .csv format. Our webserver can help computational drug discovery researchers find new therapeutics and build new webservers. The CCDD is freely available at: https://srampogu-ccdd-ccdd-8uldk8.streamlit.app/.
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spelling pubmed-104400612023-08-21 Curcumin Chalcone Derivatives Database (CCDD): a Python framework for natural compound derivatives database Rampogu, Shailima Balasubramaniyam, Thananjeyan Lee, Joon-Hwa PeerJ Bioinformatics We built the Curcumin Chalcone Derivatives Database (CCDD) to enable the effective virtual screening of highly potent curcumin and its analogs. The two-dimensional (2D) structures were drawn using the ChemBioOffice package and converted to 3D structures using Discovery Studio Visualizer V 2021 (DS). The database was built using different Python modules. For the 3D structures, different Python packages were used to obtain the data frame of compounds. This framework is also used to visualize the compounds. The webserver enables the users to screen the compounds according to Lipinski’s rule of five. The structures can be downloaded in .sdf and .mol format. The data frame (df) can be downloaded in .csv format. Our webserver can help computational drug discovery researchers find new therapeutics and build new webservers. The CCDD is freely available at: https://srampogu-ccdd-ccdd-8uldk8.streamlit.app/. PeerJ Inc. 2023-08-17 /pmc/articles/PMC10440061/ /pubmed/37605747 http://dx.doi.org/10.7717/peerj.15885 Text en © 2023 Rampogu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Rampogu, Shailima
Balasubramaniyam, Thananjeyan
Lee, Joon-Hwa
Curcumin Chalcone Derivatives Database (CCDD): a Python framework for natural compound derivatives database
title Curcumin Chalcone Derivatives Database (CCDD): a Python framework for natural compound derivatives database
title_full Curcumin Chalcone Derivatives Database (CCDD): a Python framework for natural compound derivatives database
title_fullStr Curcumin Chalcone Derivatives Database (CCDD): a Python framework for natural compound derivatives database
title_full_unstemmed Curcumin Chalcone Derivatives Database (CCDD): a Python framework for natural compound derivatives database
title_short Curcumin Chalcone Derivatives Database (CCDD): a Python framework for natural compound derivatives database
title_sort curcumin chalcone derivatives database (ccdd): a python framework for natural compound derivatives database
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10440061/
https://www.ncbi.nlm.nih.gov/pubmed/37605747
http://dx.doi.org/10.7717/peerj.15885
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