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Microbiome dataset of bacterial and fungal communities in anthosphere of twelve different wild plants in South Korea

This dataset provides detailed profiles of bacterial and fungal communities associated with flowers (anthosphere) of 12 different plant species collected from remote and secluded locations characterized by a flourishing and diverse plant ecosystem. In total, 144 flower samples were collected from 12...

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Autores principales: Kim, Jihoon, Cui, Yingshun, Lee, Haeun, Chun, Seong-Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10440446/
https://www.ncbi.nlm.nih.gov/pubmed/37609647
http://dx.doi.org/10.1016/j.dib.2023.109470
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author Kim, Jihoon
Cui, Yingshun
Lee, Haeun
Chun, Seong-Jun
author_facet Kim, Jihoon
Cui, Yingshun
Lee, Haeun
Chun, Seong-Jun
author_sort Kim, Jihoon
collection PubMed
description This dataset provides detailed profiles of bacterial and fungal communities associated with flowers (anthosphere) of 12 different plant species collected from remote and secluded locations characterized by a flourishing and diverse plant ecosystem. In total, 144 flower samples were collected from 12 different wild plants. Bacterial 16S rRNA and fungal ITS genes obtained using the Illumina Miseq approach were used to describe the anthosphere. Metadata and raw sequences obtained in this study are available from the National Center for Biotechnology Information (BioProject ID: PRJNA983070). Amplicon Sequence Variants (ASVs) of bacteria and fungi were analyzed using the DADA2 pipeline. After quality filtering, trimming, and removing the chimeric sequences, 2076 bacterial and 2152 fungal ASVs were identified in the anthosphere. Burkholderiales and Enterobacterales in bacteria, and Pleosporales in fungi were the predominant groups in the anthosphere regardless of the plant species. Among the twelve different plant species, Forsythia koreana exhibited the highest abundance of both bacterial and fungal groups. This dataset represents a detailed exploration of the anthosphere in the most abundant and commonly observed plant species in South Korea, and provides new insights into the microbial communities and interactions of the anthosphere.
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spelling pubmed-104404462023-08-22 Microbiome dataset of bacterial and fungal communities in anthosphere of twelve different wild plants in South Korea Kim, Jihoon Cui, Yingshun Lee, Haeun Chun, Seong-Jun Data Brief Data Article This dataset provides detailed profiles of bacterial and fungal communities associated with flowers (anthosphere) of 12 different plant species collected from remote and secluded locations characterized by a flourishing and diverse plant ecosystem. In total, 144 flower samples were collected from 12 different wild plants. Bacterial 16S rRNA and fungal ITS genes obtained using the Illumina Miseq approach were used to describe the anthosphere. Metadata and raw sequences obtained in this study are available from the National Center for Biotechnology Information (BioProject ID: PRJNA983070). Amplicon Sequence Variants (ASVs) of bacteria and fungi were analyzed using the DADA2 pipeline. After quality filtering, trimming, and removing the chimeric sequences, 2076 bacterial and 2152 fungal ASVs were identified in the anthosphere. Burkholderiales and Enterobacterales in bacteria, and Pleosporales in fungi were the predominant groups in the anthosphere regardless of the plant species. Among the twelve different plant species, Forsythia koreana exhibited the highest abundance of both bacterial and fungal groups. This dataset represents a detailed exploration of the anthosphere in the most abundant and commonly observed plant species in South Korea, and provides new insights into the microbial communities and interactions of the anthosphere. Elsevier 2023-08-05 /pmc/articles/PMC10440446/ /pubmed/37609647 http://dx.doi.org/10.1016/j.dib.2023.109470 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Kim, Jihoon
Cui, Yingshun
Lee, Haeun
Chun, Seong-Jun
Microbiome dataset of bacterial and fungal communities in anthosphere of twelve different wild plants in South Korea
title Microbiome dataset of bacterial and fungal communities in anthosphere of twelve different wild plants in South Korea
title_full Microbiome dataset of bacterial and fungal communities in anthosphere of twelve different wild plants in South Korea
title_fullStr Microbiome dataset of bacterial and fungal communities in anthosphere of twelve different wild plants in South Korea
title_full_unstemmed Microbiome dataset of bacterial and fungal communities in anthosphere of twelve different wild plants in South Korea
title_short Microbiome dataset of bacterial and fungal communities in anthosphere of twelve different wild plants in South Korea
title_sort microbiome dataset of bacterial and fungal communities in anthosphere of twelve different wild plants in south korea
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10440446/
https://www.ncbi.nlm.nih.gov/pubmed/37609647
http://dx.doi.org/10.1016/j.dib.2023.109470
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