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Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies

The objective of this study is to evaluate the efficacy of deep learning (DL) techniques in improving the quality of diffusion MRI (dMRI) data in clinical applications. The study aims to determine whether the use of artificial intelligence (AI) methods in medical images may result in the loss of cri...

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Autores principales: Aja-Fernández, Santiago, Martín-Martín, Carmen, Planchuelo-Gómez, Álvaro, Faiyaz, Abrar, Uddin, Md Nasir, Schifitto, Giovanni, Tiwari, Abhishek, Shigwan, Saurabh J., Kumar Singh, Rajeev, Zheng, Tianshu, Cao, Zuozhen, Wu, Dan, Blumberg, Stefano B., Sen, Snigdha, Goodwin-Allcock, Tobias, Slator, Paddy J., Yigit Avci, Mehmet, Li, Zihan, Bilgic, Berkin, Tian, Qiyuan, Wang, Xinyi, Tang, Zihao, Cabezas, Mariano, Rauland, Amelie, Merhof, Dorit, Manzano Maria, Renata, Campos, Vinícius Paraníba, Santini, Tales, da Costa Vieira, Marcelo Andrade, HashemizadehKolowri, SeyyedKazem, DiBella, Edward, Peng, Chenxu, Shen, Zhimin, Chen, Zan, Ullah, Irfan, Mani, Merry, Abdolmotalleby, Hesam, Eckstrom, Samuel, Baete, Steven H., Filipiak, Patryk, Dong, Tanxin, Fan, Qiuyun, de Luis-García, Rodrigo, Tristán-Vega, Antonio, Pieciak, Tomasz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10440596/
https://www.ncbi.nlm.nih.gov/pubmed/37572514
http://dx.doi.org/10.1016/j.nicl.2023.103483
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author Aja-Fernández, Santiago
Martín-Martín, Carmen
Planchuelo-Gómez, Álvaro
Faiyaz, Abrar
Uddin, Md Nasir
Schifitto, Giovanni
Tiwari, Abhishek
Shigwan, Saurabh J.
Kumar Singh, Rajeev
Zheng, Tianshu
Cao, Zuozhen
Wu, Dan
Blumberg, Stefano B.
Sen, Snigdha
Goodwin-Allcock, Tobias
Slator, Paddy J.
Yigit Avci, Mehmet
Li, Zihan
Bilgic, Berkin
Tian, Qiyuan
Wang, Xinyi
Tang, Zihao
Cabezas, Mariano
Rauland, Amelie
Merhof, Dorit
Manzano Maria, Renata
Campos, Vinícius Paraníba
Santini, Tales
da Costa Vieira, Marcelo Andrade
HashemizadehKolowri, SeyyedKazem
DiBella, Edward
Peng, Chenxu
Shen, Zhimin
Chen, Zan
Ullah, Irfan
Mani, Merry
Abdolmotalleby, Hesam
Eckstrom, Samuel
Baete, Steven H.
Filipiak, Patryk
Dong, Tanxin
Fan, Qiuyun
de Luis-García, Rodrigo
Tristán-Vega, Antonio
Pieciak, Tomasz
author_facet Aja-Fernández, Santiago
Martín-Martín, Carmen
Planchuelo-Gómez, Álvaro
Faiyaz, Abrar
Uddin, Md Nasir
Schifitto, Giovanni
Tiwari, Abhishek
Shigwan, Saurabh J.
Kumar Singh, Rajeev
Zheng, Tianshu
Cao, Zuozhen
Wu, Dan
Blumberg, Stefano B.
Sen, Snigdha
Goodwin-Allcock, Tobias
Slator, Paddy J.
Yigit Avci, Mehmet
Li, Zihan
Bilgic, Berkin
Tian, Qiyuan
Wang, Xinyi
Tang, Zihao
Cabezas, Mariano
Rauland, Amelie
Merhof, Dorit
Manzano Maria, Renata
Campos, Vinícius Paraníba
Santini, Tales
da Costa Vieira, Marcelo Andrade
HashemizadehKolowri, SeyyedKazem
DiBella, Edward
Peng, Chenxu
Shen, Zhimin
Chen, Zan
Ullah, Irfan
Mani, Merry
Abdolmotalleby, Hesam
Eckstrom, Samuel
Baete, Steven H.
Filipiak, Patryk
Dong, Tanxin
Fan, Qiuyun
de Luis-García, Rodrigo
Tristán-Vega, Antonio
Pieciak, Tomasz
author_sort Aja-Fernández, Santiago
collection PubMed
description The objective of this study is to evaluate the efficacy of deep learning (DL) techniques in improving the quality of diffusion MRI (dMRI) data in clinical applications. The study aims to determine whether the use of artificial intelligence (AI) methods in medical images may result in the loss of critical clinical information and/or the appearance of false information. To assess this, the focus was on the angular resolution of dMRI and a clinical trial was conducted on migraine, specifically between episodic and chronic migraine patients. The number of gradient directions had an impact on white matter analysis results, with statistically significant differences between groups being drastically reduced when using 21 gradient directions instead of the original 61. Fourteen teams from different institutions were tasked to use DL to enhance three diffusion metrics (FA, AD and MD) calculated from data acquired with 21 gradient directions and a b-value of 1000 s/mm(2). The goal was to produce results that were comparable to those calculated from 61 gradient directions. The results were evaluated using both standard image quality metrics and Tract-Based Spatial Statistics (TBSS) to compare episodic and chronic migraine patients. The study results suggest that while most DL techniques improved the ability to detect statistical differences between groups, they also led to an increase in false positive. The results showed that there was a constant growth rate of false positives linearly proportional to the new true positives, which highlights the risk of generalization of AI-based tasks when assessing diverse clinical cohorts and training using data from a single group. The methods also showed divergent performance when replicating the original distribution of the data and some exhibited significant bias. In conclusion, extreme caution should be exercised when using AI methods for harmonization or synthesis in clinical studies when processing heterogeneous data in clinical studies, as important information may be altered, even when global metrics such as structural similarity or peak signal-to-noise ratio appear to suggest otherwise.
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spelling pubmed-104405962023-08-22 Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies Aja-Fernández, Santiago Martín-Martín, Carmen Planchuelo-Gómez, Álvaro Faiyaz, Abrar Uddin, Md Nasir Schifitto, Giovanni Tiwari, Abhishek Shigwan, Saurabh J. Kumar Singh, Rajeev Zheng, Tianshu Cao, Zuozhen Wu, Dan Blumberg, Stefano B. Sen, Snigdha Goodwin-Allcock, Tobias Slator, Paddy J. Yigit Avci, Mehmet Li, Zihan Bilgic, Berkin Tian, Qiyuan Wang, Xinyi Tang, Zihao Cabezas, Mariano Rauland, Amelie Merhof, Dorit Manzano Maria, Renata Campos, Vinícius Paraníba Santini, Tales da Costa Vieira, Marcelo Andrade HashemizadehKolowri, SeyyedKazem DiBella, Edward Peng, Chenxu Shen, Zhimin Chen, Zan Ullah, Irfan Mani, Merry Abdolmotalleby, Hesam Eckstrom, Samuel Baete, Steven H. Filipiak, Patryk Dong, Tanxin Fan, Qiuyun de Luis-García, Rodrigo Tristán-Vega, Antonio Pieciak, Tomasz Neuroimage Clin Regular Article The objective of this study is to evaluate the efficacy of deep learning (DL) techniques in improving the quality of diffusion MRI (dMRI) data in clinical applications. The study aims to determine whether the use of artificial intelligence (AI) methods in medical images may result in the loss of critical clinical information and/or the appearance of false information. To assess this, the focus was on the angular resolution of dMRI and a clinical trial was conducted on migraine, specifically between episodic and chronic migraine patients. The number of gradient directions had an impact on white matter analysis results, with statistically significant differences between groups being drastically reduced when using 21 gradient directions instead of the original 61. Fourteen teams from different institutions were tasked to use DL to enhance three diffusion metrics (FA, AD and MD) calculated from data acquired with 21 gradient directions and a b-value of 1000 s/mm(2). The goal was to produce results that were comparable to those calculated from 61 gradient directions. The results were evaluated using both standard image quality metrics and Tract-Based Spatial Statistics (TBSS) to compare episodic and chronic migraine patients. The study results suggest that while most DL techniques improved the ability to detect statistical differences between groups, they also led to an increase in false positive. The results showed that there was a constant growth rate of false positives linearly proportional to the new true positives, which highlights the risk of generalization of AI-based tasks when assessing diverse clinical cohorts and training using data from a single group. The methods also showed divergent performance when replicating the original distribution of the data and some exhibited significant bias. In conclusion, extreme caution should be exercised when using AI methods for harmonization or synthesis in clinical studies when processing heterogeneous data in clinical studies, as important information may be altered, even when global metrics such as structural similarity or peak signal-to-noise ratio appear to suggest otherwise. Elsevier 2023-07-28 /pmc/articles/PMC10440596/ /pubmed/37572514 http://dx.doi.org/10.1016/j.nicl.2023.103483 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Regular Article
Aja-Fernández, Santiago
Martín-Martín, Carmen
Planchuelo-Gómez, Álvaro
Faiyaz, Abrar
Uddin, Md Nasir
Schifitto, Giovanni
Tiwari, Abhishek
Shigwan, Saurabh J.
Kumar Singh, Rajeev
Zheng, Tianshu
Cao, Zuozhen
Wu, Dan
Blumberg, Stefano B.
Sen, Snigdha
Goodwin-Allcock, Tobias
Slator, Paddy J.
Yigit Avci, Mehmet
Li, Zihan
Bilgic, Berkin
Tian, Qiyuan
Wang, Xinyi
Tang, Zihao
Cabezas, Mariano
Rauland, Amelie
Merhof, Dorit
Manzano Maria, Renata
Campos, Vinícius Paraníba
Santini, Tales
da Costa Vieira, Marcelo Andrade
HashemizadehKolowri, SeyyedKazem
DiBella, Edward
Peng, Chenxu
Shen, Zhimin
Chen, Zan
Ullah, Irfan
Mani, Merry
Abdolmotalleby, Hesam
Eckstrom, Samuel
Baete, Steven H.
Filipiak, Patryk
Dong, Tanxin
Fan, Qiuyun
de Luis-García, Rodrigo
Tristán-Vega, Antonio
Pieciak, Tomasz
Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies
title Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies
title_full Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies
title_fullStr Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies
title_full_unstemmed Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies
title_short Validation of deep learning techniques for quality augmentation in diffusion MRI for clinical studies
title_sort validation of deep learning techniques for quality augmentation in diffusion mri for clinical studies
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10440596/
https://www.ncbi.nlm.nih.gov/pubmed/37572514
http://dx.doi.org/10.1016/j.nicl.2023.103483
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