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VNN1 as a potential biomarker for sepsis diagnosis and its implications in immune infiltration and tumor prognosis
BACKGROUND: This study explored novel biomarkers for diagnosing sepsis, a severe disease prevalent in clinical settings, particularly threatening to elderly patients. METHODS: Using microarray gene expression datasets and fatty acid metabolism signatures, we identified differentially expressed genes...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10440699/ https://www.ncbi.nlm.nih.gov/pubmed/37608823 http://dx.doi.org/10.3389/fmed.2023.1236484 |
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author | Guan, Wei Xu, Jiaruo Shi, Yinghan Wang, Xiuli Gu, Shaoyan Xie, Lixin |
author_facet | Guan, Wei Xu, Jiaruo Shi, Yinghan Wang, Xiuli Gu, Shaoyan Xie, Lixin |
author_sort | Guan, Wei |
collection | PubMed |
description | BACKGROUND: This study explored novel biomarkers for diagnosing sepsis, a severe disease prevalent in clinical settings, particularly threatening to elderly patients. METHODS: Using microarray gene expression datasets and fatty acid metabolism signatures, we identified differentially expressed genes between sepsis and healthy control groups. Correlations between candidate genes, immune cells, and immune function were assessed. Logistic regression analysis and single-gene GSEA analysis were performed to identify potential biomarkers. The biomarkers’ association with different types of tumors was investigated. RESULTS: Twelve genes related to fatty acid metabolism were excluded. CA4, OLAN, and VNN1 were found relevant to immune cells and function. Among these, only VNN1 showed statistical significance (p < 0.05), with a strong area under the ROC curve (0.995). High VNN1 expression indicated activation of certain metabolic pathways, while low expression suggested potential autoimmune responses. VNN1 was up-regulated in eight tumors and down-regulated in eight others. High VNN1 expression was linked to poor prognosis in six types of tumors, and low expression was linked to poor prognosis in four types of tumors. VNN1 expression showed correlations with stromal scores, immune scores, and cancer purity in different types of tumors. CONCLUSION: VNN1 holds promise as a potential biomarker for sepsis diagnosis and is significant in identifying immune infiltration in tumor tissue and predicting tumor prognosis. |
format | Online Article Text |
id | pubmed-10440699 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104406992023-08-22 VNN1 as a potential biomarker for sepsis diagnosis and its implications in immune infiltration and tumor prognosis Guan, Wei Xu, Jiaruo Shi, Yinghan Wang, Xiuli Gu, Shaoyan Xie, Lixin Front Med (Lausanne) Medicine BACKGROUND: This study explored novel biomarkers for diagnosing sepsis, a severe disease prevalent in clinical settings, particularly threatening to elderly patients. METHODS: Using microarray gene expression datasets and fatty acid metabolism signatures, we identified differentially expressed genes between sepsis and healthy control groups. Correlations between candidate genes, immune cells, and immune function were assessed. Logistic regression analysis and single-gene GSEA analysis were performed to identify potential biomarkers. The biomarkers’ association with different types of tumors was investigated. RESULTS: Twelve genes related to fatty acid metabolism were excluded. CA4, OLAN, and VNN1 were found relevant to immune cells and function. Among these, only VNN1 showed statistical significance (p < 0.05), with a strong area under the ROC curve (0.995). High VNN1 expression indicated activation of certain metabolic pathways, while low expression suggested potential autoimmune responses. VNN1 was up-regulated in eight tumors and down-regulated in eight others. High VNN1 expression was linked to poor prognosis in six types of tumors, and low expression was linked to poor prognosis in four types of tumors. VNN1 expression showed correlations with stromal scores, immune scores, and cancer purity in different types of tumors. CONCLUSION: VNN1 holds promise as a potential biomarker for sepsis diagnosis and is significant in identifying immune infiltration in tumor tissue and predicting tumor prognosis. Frontiers Media S.A. 2023-08-07 /pmc/articles/PMC10440699/ /pubmed/37608823 http://dx.doi.org/10.3389/fmed.2023.1236484 Text en Copyright © 2023 Guan, Xu, Shi, Wang, Gu and Xie. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Medicine Guan, Wei Xu, Jiaruo Shi, Yinghan Wang, Xiuli Gu, Shaoyan Xie, Lixin VNN1 as a potential biomarker for sepsis diagnosis and its implications in immune infiltration and tumor prognosis |
title | VNN1 as a potential biomarker for sepsis diagnosis and its implications in immune infiltration and tumor prognosis |
title_full | VNN1 as a potential biomarker for sepsis diagnosis and its implications in immune infiltration and tumor prognosis |
title_fullStr | VNN1 as a potential biomarker for sepsis diagnosis and its implications in immune infiltration and tumor prognosis |
title_full_unstemmed | VNN1 as a potential biomarker for sepsis diagnosis and its implications in immune infiltration and tumor prognosis |
title_short | VNN1 as a potential biomarker for sepsis diagnosis and its implications in immune infiltration and tumor prognosis |
title_sort | vnn1 as a potential biomarker for sepsis diagnosis and its implications in immune infiltration and tumor prognosis |
topic | Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10440699/ https://www.ncbi.nlm.nih.gov/pubmed/37608823 http://dx.doi.org/10.3389/fmed.2023.1236484 |
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