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MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology

OBJECTIVE: Magnetic resonance imaging of the brain is a useful tool in both the clinic and research settings, aiding in the diagnosis and treatments of neurological disease and expanding our knowledge of the brain. However, there are many challenges inherent in managing and analyzing MRI data, due i...

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Autores principales: Bartnik, Alexander, Serra, Lucas M., Smith, Mackenzie, Duncan, William D., Wishnie, Lauren, Ruttenberg, Alan, Dwyer, Michael G., Diehl, Alexander D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10441376/
https://www.ncbi.nlm.nih.gov/pubmed/37609265
http://dx.doi.org/10.1101/2023.08.04.552020
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author Bartnik, Alexander
Serra, Lucas M.
Smith, Mackenzie
Duncan, William D.
Wishnie, Lauren
Ruttenberg, Alan
Dwyer, Michael G.
Diehl, Alexander D.
author_facet Bartnik, Alexander
Serra, Lucas M.
Smith, Mackenzie
Duncan, William D.
Wishnie, Lauren
Ruttenberg, Alan
Dwyer, Michael G.
Diehl, Alexander D.
author_sort Bartnik, Alexander
collection PubMed
description OBJECTIVE: Magnetic resonance imaging of the brain is a useful tool in both the clinic and research settings, aiding in the diagnosis and treatments of neurological disease and expanding our knowledge of the brain. However, there are many challenges inherent in managing and analyzing MRI data, due in large part to the heterogeneity of data acquisition. MATERIALS AND METHODS: To address this, we have developed MRIO, the Magnetic Resonance Imaging Acquisition and Analysis Ontology. RESULTS: MRIO provides well-reasoned classes and logical axioms for the acquisition of several MRI acquisition types and well-known, peer-reviewed analysis software, facilitating the use of MRI data. These classes provide a common language for the neuroimaging research process and help standardize the organization and analysis of MRI data for reproducible datasets. We also provide queries for automated assignment of analyses for given MRI types. DISCUSSION: MRIO aids researchers in managing neuroimaging studies by helping organize and annotate MRI data and integrating with existing standards such as Digital Imaging and Communications in Medicine and the Brain Imaging Data Structure, enhancing reproducibility and interoperability. MRIO was constructed according to Open Biomedical Ontologies Foundry principals and has contributed several terms to the Ontology for Biomedical Investigations to help bridge neuroimaging data to other domains. CONCLUSION: MRIO addresses the need for a “common language” for MRI that can help manage the neuroimaging research, by enabling researchers to identify appropriate analyses for sets of scans and facilitating data organization and reporting.
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spelling pubmed-104413762023-08-22 MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology Bartnik, Alexander Serra, Lucas M. Smith, Mackenzie Duncan, William D. Wishnie, Lauren Ruttenberg, Alan Dwyer, Michael G. Diehl, Alexander D. bioRxiv Article OBJECTIVE: Magnetic resonance imaging of the brain is a useful tool in both the clinic and research settings, aiding in the diagnosis and treatments of neurological disease and expanding our knowledge of the brain. However, there are many challenges inherent in managing and analyzing MRI data, due in large part to the heterogeneity of data acquisition. MATERIALS AND METHODS: To address this, we have developed MRIO, the Magnetic Resonance Imaging Acquisition and Analysis Ontology. RESULTS: MRIO provides well-reasoned classes and logical axioms for the acquisition of several MRI acquisition types and well-known, peer-reviewed analysis software, facilitating the use of MRI data. These classes provide a common language for the neuroimaging research process and help standardize the organization and analysis of MRI data for reproducible datasets. We also provide queries for automated assignment of analyses for given MRI types. DISCUSSION: MRIO aids researchers in managing neuroimaging studies by helping organize and annotate MRI data and integrating with existing standards such as Digital Imaging and Communications in Medicine and the Brain Imaging Data Structure, enhancing reproducibility and interoperability. MRIO was constructed according to Open Biomedical Ontologies Foundry principals and has contributed several terms to the Ontology for Biomedical Investigations to help bridge neuroimaging data to other domains. CONCLUSION: MRIO addresses the need for a “common language” for MRI that can help manage the neuroimaging research, by enabling researchers to identify appropriate analyses for sets of scans and facilitating data organization and reporting. Cold Spring Harbor Laboratory 2023-08-07 /pmc/articles/PMC10441376/ /pubmed/37609265 http://dx.doi.org/10.1101/2023.08.04.552020 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Bartnik, Alexander
Serra, Lucas M.
Smith, Mackenzie
Duncan, William D.
Wishnie, Lauren
Ruttenberg, Alan
Dwyer, Michael G.
Diehl, Alexander D.
MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology
title MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology
title_full MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology
title_fullStr MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology
title_full_unstemmed MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology
title_short MRIO: The Magnetic Resonance Imaging Acquisition and Analysis Ontology
title_sort mrio: the magnetic resonance imaging acquisition and analysis ontology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10441376/
https://www.ncbi.nlm.nih.gov/pubmed/37609265
http://dx.doi.org/10.1101/2023.08.04.552020
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