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The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)

Automated brain tumor segmentation methods have become well-established and reached performance levels offering clear clinical utility. These methods typically rely on four input magnetic resonance imaging (MRI) modalities: T1-weighted images with and without contrast enhancement, T2-weighted images...

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Autores principales: Li, Hongwei Bran, Conte, Gian Marco, Anwar, Syed Muhammad, Kofler, Florian, Ezhov, Ivan, van Leemput, Koen, Piraud, Marie, Diaz, Maria, Cole, Byrone, Calabrese, Evan, Rudie, Jeff, Meissen, Felix, Adewole, Maruf, Janas, Anastasia, Kazerooni, Anahita Fathi, LaBella, Dominic, Moawad, Ahmed W., Farahani, Keyvan, Eddy, James, Bergquist, Timothy, Chung, Verena, Shinohara, Russell Takeshi, Dako, Farouk, Wiggins, Walter, Reitman, Zachary, Wang, Chunhao, Liu, Xinyang, Jiang, Zhifan, Familiar, Ariana, Johanson, Elaine, Meier, Zeke, Davatzikos, Christos, Freymann, John, Kirby, Justin, Bilello, Michel, Fathallah-Shaykh, Hassan M., Wiest, Roland, Kirschke, Jan, Colen, Rivka R., Kotrotsou, Aikaterini, Lamontagne, Pamela, Marcus, Daniel, Milchenko, Mikhail, Nazeri, Arash, Weber, Marc-André, Mahajan, Abhishek, Mohan, Suyash, Mongan, John, Hess, Christopher, Cha, Soonmee, Villanueva-Meyer, Javier, Colak, Errol, Crivellaro, Priscila, Jakab, Andras, Albrecht, Jake, Anazodo, Udunna, Aboian, Mariam, Yu, Thomas, Baid, Ujjwal, Bakas, Spyridon, Linguraru, Marius George, Menze, Bjoern, Iglesias, Juan Eugenio, Wiestler, Benedikt
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cornell University 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10441440/
https://www.ncbi.nlm.nih.gov/pubmed/37608932
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author Li, Hongwei Bran
Conte, Gian Marco
Anwar, Syed Muhammad
Kofler, Florian
Ezhov, Ivan
van Leemput, Koen
Piraud, Marie
Diaz, Maria
Cole, Byrone
Calabrese, Evan
Rudie, Jeff
Meissen, Felix
Adewole, Maruf
Janas, Anastasia
Kazerooni, Anahita Fathi
LaBella, Dominic
Moawad, Ahmed W.
Farahani, Keyvan
Eddy, James
Bergquist, Timothy
Chung, Verena
Shinohara, Russell Takeshi
Dako, Farouk
Wiggins, Walter
Reitman, Zachary
Wang, Chunhao
Liu, Xinyang
Jiang, Zhifan
Familiar, Ariana
Johanson, Elaine
Meier, Zeke
Davatzikos, Christos
Freymann, John
Kirby, Justin
Bilello, Michel
Fathallah-Shaykh, Hassan M.
Wiest, Roland
Kirschke, Jan
Colen, Rivka R.
Kotrotsou, Aikaterini
Lamontagne, Pamela
Marcus, Daniel
Milchenko, Mikhail
Nazeri, Arash
Weber, Marc-André
Mahajan, Abhishek
Mohan, Suyash
Mongan, John
Hess, Christopher
Cha, Soonmee
Villanueva-Meyer, Javier
Colak, Errol
Crivellaro, Priscila
Jakab, Andras
Albrecht, Jake
Anazodo, Udunna
Aboian, Mariam
Yu, Thomas
Chung, Verena
Bergquist, Timothy
Eddy, James
Albrecht, Jake
Baid, Ujjwal
Bakas, Spyridon
Linguraru, Marius George
Menze, Bjoern
Iglesias, Juan Eugenio
Wiestler, Benedikt
author_facet Li, Hongwei Bran
Conte, Gian Marco
Anwar, Syed Muhammad
Kofler, Florian
Ezhov, Ivan
van Leemput, Koen
Piraud, Marie
Diaz, Maria
Cole, Byrone
Calabrese, Evan
Rudie, Jeff
Meissen, Felix
Adewole, Maruf
Janas, Anastasia
Kazerooni, Anahita Fathi
LaBella, Dominic
Moawad, Ahmed W.
Farahani, Keyvan
Eddy, James
Bergquist, Timothy
Chung, Verena
Shinohara, Russell Takeshi
Dako, Farouk
Wiggins, Walter
Reitman, Zachary
Wang, Chunhao
Liu, Xinyang
Jiang, Zhifan
Familiar, Ariana
Johanson, Elaine
Meier, Zeke
Davatzikos, Christos
Freymann, John
Kirby, Justin
Bilello, Michel
Fathallah-Shaykh, Hassan M.
Wiest, Roland
Kirschke, Jan
Colen, Rivka R.
Kotrotsou, Aikaterini
Lamontagne, Pamela
Marcus, Daniel
Milchenko, Mikhail
Nazeri, Arash
Weber, Marc-André
Mahajan, Abhishek
Mohan, Suyash
Mongan, John
Hess, Christopher
Cha, Soonmee
Villanueva-Meyer, Javier
Colak, Errol
Crivellaro, Priscila
Jakab, Andras
Albrecht, Jake
Anazodo, Udunna
Aboian, Mariam
Yu, Thomas
Chung, Verena
Bergquist, Timothy
Eddy, James
Albrecht, Jake
Baid, Ujjwal
Bakas, Spyridon
Linguraru, Marius George
Menze, Bjoern
Iglesias, Juan Eugenio
Wiestler, Benedikt
author_sort Li, Hongwei Bran
collection PubMed
description Automated brain tumor segmentation methods have become well-established and reached performance levels offering clear clinical utility. These methods typically rely on four input magnetic resonance imaging (MRI) modalities: T1-weighted images with and without contrast enhancement, T2-weighted images, and FLAIR images. However, some sequences are often missing in clinical practice due to time constraints or image artifacts, such as patient motion. Consequently, the ability to substitute missing modalities and gain segmentation performance is highly desirable and necessary for the broader adoption of these algorithms in the clinical routine. In this work, we present the establishment of the Brain MR Image Synthesis Benchmark (BraSyn) in conjunction with the Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2023. The primary objective of this challenge is to evaluate image synthesis methods that can realistically generate missing MRI modalities when multiple available images are provided. The ultimate aim is to facilitate automated brain tumor segmentation pipelines. The image dataset used in the benchmark is diverse and multi-modal, created through collaboration with various hospitals and research institutions.
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spelling pubmed-104414402023-08-22 The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn) Li, Hongwei Bran Conte, Gian Marco Anwar, Syed Muhammad Kofler, Florian Ezhov, Ivan van Leemput, Koen Piraud, Marie Diaz, Maria Cole, Byrone Calabrese, Evan Rudie, Jeff Meissen, Felix Adewole, Maruf Janas, Anastasia Kazerooni, Anahita Fathi LaBella, Dominic Moawad, Ahmed W. Farahani, Keyvan Eddy, James Bergquist, Timothy Chung, Verena Shinohara, Russell Takeshi Dako, Farouk Wiggins, Walter Reitman, Zachary Wang, Chunhao Liu, Xinyang Jiang, Zhifan Familiar, Ariana Johanson, Elaine Meier, Zeke Davatzikos, Christos Freymann, John Kirby, Justin Bilello, Michel Fathallah-Shaykh, Hassan M. Wiest, Roland Kirschke, Jan Colen, Rivka R. Kotrotsou, Aikaterini Lamontagne, Pamela Marcus, Daniel Milchenko, Mikhail Nazeri, Arash Weber, Marc-André Mahajan, Abhishek Mohan, Suyash Mongan, John Hess, Christopher Cha, Soonmee Villanueva-Meyer, Javier Colak, Errol Crivellaro, Priscila Jakab, Andras Albrecht, Jake Anazodo, Udunna Aboian, Mariam Yu, Thomas Chung, Verena Bergquist, Timothy Eddy, James Albrecht, Jake Baid, Ujjwal Bakas, Spyridon Linguraru, Marius George Menze, Bjoern Iglesias, Juan Eugenio Wiestler, Benedikt ArXiv Article Automated brain tumor segmentation methods have become well-established and reached performance levels offering clear clinical utility. These methods typically rely on four input magnetic resonance imaging (MRI) modalities: T1-weighted images with and without contrast enhancement, T2-weighted images, and FLAIR images. However, some sequences are often missing in clinical practice due to time constraints or image artifacts, such as patient motion. Consequently, the ability to substitute missing modalities and gain segmentation performance is highly desirable and necessary for the broader adoption of these algorithms in the clinical routine. In this work, we present the establishment of the Brain MR Image Synthesis Benchmark (BraSyn) in conjunction with the Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2023. The primary objective of this challenge is to evaluate image synthesis methods that can realistically generate missing MRI modalities when multiple available images are provided. The ultimate aim is to facilitate automated brain tumor segmentation pipelines. The image dataset used in the benchmark is diverse and multi-modal, created through collaboration with various hospitals and research institutions. Cornell University 2023-06-28 /pmc/articles/PMC10441440/ /pubmed/37608932 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Li, Hongwei Bran
Conte, Gian Marco
Anwar, Syed Muhammad
Kofler, Florian
Ezhov, Ivan
van Leemput, Koen
Piraud, Marie
Diaz, Maria
Cole, Byrone
Calabrese, Evan
Rudie, Jeff
Meissen, Felix
Adewole, Maruf
Janas, Anastasia
Kazerooni, Anahita Fathi
LaBella, Dominic
Moawad, Ahmed W.
Farahani, Keyvan
Eddy, James
Bergquist, Timothy
Chung, Verena
Shinohara, Russell Takeshi
Dako, Farouk
Wiggins, Walter
Reitman, Zachary
Wang, Chunhao
Liu, Xinyang
Jiang, Zhifan
Familiar, Ariana
Johanson, Elaine
Meier, Zeke
Davatzikos, Christos
Freymann, John
Kirby, Justin
Bilello, Michel
Fathallah-Shaykh, Hassan M.
Wiest, Roland
Kirschke, Jan
Colen, Rivka R.
Kotrotsou, Aikaterini
Lamontagne, Pamela
Marcus, Daniel
Milchenko, Mikhail
Nazeri, Arash
Weber, Marc-André
Mahajan, Abhishek
Mohan, Suyash
Mongan, John
Hess, Christopher
Cha, Soonmee
Villanueva-Meyer, Javier
Colak, Errol
Crivellaro, Priscila
Jakab, Andras
Albrecht, Jake
Anazodo, Udunna
Aboian, Mariam
Yu, Thomas
Chung, Verena
Bergquist, Timothy
Eddy, James
Albrecht, Jake
Baid, Ujjwal
Bakas, Spyridon
Linguraru, Marius George
Menze, Bjoern
Iglesias, Juan Eugenio
Wiestler, Benedikt
The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)
title The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)
title_full The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)
title_fullStr The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)
title_full_unstemmed The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)
title_short The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)
title_sort brain tumor segmentation (brats) challenge 2023: brain mr image synthesis for tumor segmentation (brasyn)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10441440/
https://www.ncbi.nlm.nih.gov/pubmed/37608932
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