Cargando…
Feature-aware unsupervised lesion segmentation for brain tumor images using fast data density functional transform
We demonstrate that isomorphically mapping gray-level medical image matrices onto energy spaces underlying the framework of fast data density functional transform (fDDFT) can achieve the unsupervised recognition of lesion morphology. By introducing the architecture of geometric deep learning and met...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10442428/ https://www.ncbi.nlm.nih.gov/pubmed/37604860 http://dx.doi.org/10.1038/s41598-023-40848-5 |
_version_ | 1785093595544420352 |
---|---|
author | Huang, Shin-Jhe Chen, Chien-Chang Kao, Yamin Lu, Henry Horng-Shing |
author_facet | Huang, Shin-Jhe Chen, Chien-Chang Kao, Yamin Lu, Henry Horng-Shing |
author_sort | Huang, Shin-Jhe |
collection | PubMed |
description | We demonstrate that isomorphically mapping gray-level medical image matrices onto energy spaces underlying the framework of fast data density functional transform (fDDFT) can achieve the unsupervised recognition of lesion morphology. By introducing the architecture of geometric deep learning and metrics of graph neural networks, gridized density functionals of the fDDFT establish an unsupervised feature-aware mechanism with global convolutional kernels to extract the most likely lesion boundaries and produce lesion segmentation. An AutoEncoder-assisted module reduces the computational complexity from [Formula: see text] to [Formula: see text] , thus efficiently speeding up global convolutional operations. We validate their performance utilizing various open-access datasets and discuss limitations. The inference time of each object in large three-dimensional datasets is 1.76 s on average. The proposed gridized density functionals have activation capability synergized with gradient ascent operations, hence can be modularized and embedded in pipelines of modern deep neural networks. Algorithms of geometric stability and similarity convergence also raise the accuracy of unsupervised recognition and segmentation of lesion images. Their performance achieves the standard requirement for conventional deep neural networks; the median dice score is higher than 0.75. The experiment shows that the synergy of fDDFT and a naïve neural network improves the training and inference time by 58% and 51%, respectively, and the dice score raises to 0.9415. This advantage facilitates fast computational modeling in interdisciplinary applications and clinical investigation. |
format | Online Article Text |
id | pubmed-10442428 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104424282023-08-23 Feature-aware unsupervised lesion segmentation for brain tumor images using fast data density functional transform Huang, Shin-Jhe Chen, Chien-Chang Kao, Yamin Lu, Henry Horng-Shing Sci Rep Article We demonstrate that isomorphically mapping gray-level medical image matrices onto energy spaces underlying the framework of fast data density functional transform (fDDFT) can achieve the unsupervised recognition of lesion morphology. By introducing the architecture of geometric deep learning and metrics of graph neural networks, gridized density functionals of the fDDFT establish an unsupervised feature-aware mechanism with global convolutional kernels to extract the most likely lesion boundaries and produce lesion segmentation. An AutoEncoder-assisted module reduces the computational complexity from [Formula: see text] to [Formula: see text] , thus efficiently speeding up global convolutional operations. We validate their performance utilizing various open-access datasets and discuss limitations. The inference time of each object in large three-dimensional datasets is 1.76 s on average. The proposed gridized density functionals have activation capability synergized with gradient ascent operations, hence can be modularized and embedded in pipelines of modern deep neural networks. Algorithms of geometric stability and similarity convergence also raise the accuracy of unsupervised recognition and segmentation of lesion images. Their performance achieves the standard requirement for conventional deep neural networks; the median dice score is higher than 0.75. The experiment shows that the synergy of fDDFT and a naïve neural network improves the training and inference time by 58% and 51%, respectively, and the dice score raises to 0.9415. This advantage facilitates fast computational modeling in interdisciplinary applications and clinical investigation. Nature Publishing Group UK 2023-08-21 /pmc/articles/PMC10442428/ /pubmed/37604860 http://dx.doi.org/10.1038/s41598-023-40848-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Huang, Shin-Jhe Chen, Chien-Chang Kao, Yamin Lu, Henry Horng-Shing Feature-aware unsupervised lesion segmentation for brain tumor images using fast data density functional transform |
title | Feature-aware unsupervised lesion segmentation for brain tumor images using fast data density functional transform |
title_full | Feature-aware unsupervised lesion segmentation for brain tumor images using fast data density functional transform |
title_fullStr | Feature-aware unsupervised lesion segmentation for brain tumor images using fast data density functional transform |
title_full_unstemmed | Feature-aware unsupervised lesion segmentation for brain tumor images using fast data density functional transform |
title_short | Feature-aware unsupervised lesion segmentation for brain tumor images using fast data density functional transform |
title_sort | feature-aware unsupervised lesion segmentation for brain tumor images using fast data density functional transform |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10442428/ https://www.ncbi.nlm.nih.gov/pubmed/37604860 http://dx.doi.org/10.1038/s41598-023-40848-5 |
work_keys_str_mv | AT huangshinjhe featureawareunsupervisedlesionsegmentationforbraintumorimagesusingfastdatadensityfunctionaltransform AT chenchienchang featureawareunsupervisedlesionsegmentationforbraintumorimagesusingfastdatadensityfunctionaltransform AT kaoyamin featureawareunsupervisedlesionsegmentationforbraintumorimagesusingfastdatadensityfunctionaltransform AT luhenryhorngshing featureawareunsupervisedlesionsegmentationforbraintumorimagesusingfastdatadensityfunctionaltransform |