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Predicting nucleosome positioning using statistical equilibrium models in budding yeast

We present a protocol using thermodynamic models to predict nucleosome positioning with transcription factors (TFs) and chromatin remodelers. We describe step-by-step approaches to annotate genome-wide nucleosome-depleted regions (NDRs), compute nucleosome and TF occupancy, optimize parameters, and...

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Detalles Bibliográficos
Autores principales:	Kharerin, Hungyo, Bai, Lu
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2022
Materias:	Protocol
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10442889/ https://www.ncbi.nlm.nih.gov/pubmed/36520634 http://dx.doi.org/10.1016/j.xpro.2022.101926

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