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Nordcan.R: a new tool for federated analysis and quality assurance of cancer registry data
AIM OF THE ARTICLE: We present our new GDPR-compliant federated analysis programme (nordcan.R), how it is used to compute statistics for the Nordic cancer statistics web platform NORDCAN, and demonstrate that it works also with non-Nordic data. MATERIALS AND METHODS: We chose R and Stata programming...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10442944/ https://www.ncbi.nlm.nih.gov/pubmed/37614501 http://dx.doi.org/10.3389/fonc.2023.1098342 |
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author | Larønningen, Siri Skog, Anna Engholm, Gerda Ferlay, Jacques Johannesen, Tom Børge Kristiansen, Marnar Fríðheim Knoors, Daan Kønig, Simon Mathis Olafsdottir, Elinborg J. Pejicic, Sasha Pettersson, David Skovlund, Charlotte Wessel Storm, Hans H. Tian, Huidong Aagnes, Bjarte Miettinen, Joonas |
author_facet | Larønningen, Siri Skog, Anna Engholm, Gerda Ferlay, Jacques Johannesen, Tom Børge Kristiansen, Marnar Fríðheim Knoors, Daan Kønig, Simon Mathis Olafsdottir, Elinborg J. Pejicic, Sasha Pettersson, David Skovlund, Charlotte Wessel Storm, Hans H. Tian, Huidong Aagnes, Bjarte Miettinen, Joonas |
author_sort | Larønningen, Siri |
collection | PubMed |
description | AIM OF THE ARTICLE: We present our new GDPR-compliant federated analysis programme (nordcan.R), how it is used to compute statistics for the Nordic cancer statistics web platform NORDCAN, and demonstrate that it works also with non-Nordic data. MATERIALS AND METHODS: We chose R and Stata programming languages for writing nordcan.R. Additionally, the internationally used CRG Tools programme by International Agency for Research on Cancer (IARC/WHO) was employed. A formal assessment of (GDPR-compliant) anonymity of all nordcan.R outputs was performed. In order to demonstrate that nordcan.R also works with non-Nordic data, we used data from the Netherlands Cancer Registry. RESULTS: nordcan.R, publicly available on Github, takes as input cancer and general population data and produces tables of statistics. Each NORDCAN participant runs nordcan.R locally and delivers its results to IARC for publication. According to our anonymity assessment the data can be shared with international organizations, including IARC. nordcan.R incidence results on Norwegian and Dutch data are highly similar to those produced by two other independent methods. CONCLUSION: nordcan.R produces accurate cancer statistics where all personal and sensitive data are kept within each cancer registry. In the age of strict data protection policies, we have shown that international collaboration in cancer registry research and statistics reporting is achievable with the federated analysis approach. Undertakings similar to NORDCAN should consider using nordcan.R. |
format | Online Article Text |
id | pubmed-10442944 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104429442023-08-23 Nordcan.R: a new tool for federated analysis and quality assurance of cancer registry data Larønningen, Siri Skog, Anna Engholm, Gerda Ferlay, Jacques Johannesen, Tom Børge Kristiansen, Marnar Fríðheim Knoors, Daan Kønig, Simon Mathis Olafsdottir, Elinborg J. Pejicic, Sasha Pettersson, David Skovlund, Charlotte Wessel Storm, Hans H. Tian, Huidong Aagnes, Bjarte Miettinen, Joonas Front Oncol Oncology AIM OF THE ARTICLE: We present our new GDPR-compliant federated analysis programme (nordcan.R), how it is used to compute statistics for the Nordic cancer statistics web platform NORDCAN, and demonstrate that it works also with non-Nordic data. MATERIALS AND METHODS: We chose R and Stata programming languages for writing nordcan.R. Additionally, the internationally used CRG Tools programme by International Agency for Research on Cancer (IARC/WHO) was employed. A formal assessment of (GDPR-compliant) anonymity of all nordcan.R outputs was performed. In order to demonstrate that nordcan.R also works with non-Nordic data, we used data from the Netherlands Cancer Registry. RESULTS: nordcan.R, publicly available on Github, takes as input cancer and general population data and produces tables of statistics. Each NORDCAN participant runs nordcan.R locally and delivers its results to IARC for publication. According to our anonymity assessment the data can be shared with international organizations, including IARC. nordcan.R incidence results on Norwegian and Dutch data are highly similar to those produced by two other independent methods. CONCLUSION: nordcan.R produces accurate cancer statistics where all personal and sensitive data are kept within each cancer registry. In the age of strict data protection policies, we have shown that international collaboration in cancer registry research and statistics reporting is achievable with the federated analysis approach. Undertakings similar to NORDCAN should consider using nordcan.R. Frontiers Media S.A. 2023-08-08 /pmc/articles/PMC10442944/ /pubmed/37614501 http://dx.doi.org/10.3389/fonc.2023.1098342 Text en Copyright © 2023 Larønningen, Skog, Engholm, Ferlay, Johannesen, Kristiansen, Knoors, Kønig, Olafsdottir, Pejicic, Pettersson, Skovlund, Storm, Tian, Aagnes and Miettinen https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Larønningen, Siri Skog, Anna Engholm, Gerda Ferlay, Jacques Johannesen, Tom Børge Kristiansen, Marnar Fríðheim Knoors, Daan Kønig, Simon Mathis Olafsdottir, Elinborg J. Pejicic, Sasha Pettersson, David Skovlund, Charlotte Wessel Storm, Hans H. Tian, Huidong Aagnes, Bjarte Miettinen, Joonas Nordcan.R: a new tool for federated analysis and quality assurance of cancer registry data |
title | Nordcan.R: a new tool for federated analysis and quality assurance of cancer registry data |
title_full | Nordcan.R: a new tool for federated analysis and quality assurance of cancer registry data |
title_fullStr | Nordcan.R: a new tool for federated analysis and quality assurance of cancer registry data |
title_full_unstemmed | Nordcan.R: a new tool for federated analysis and quality assurance of cancer registry data |
title_short | Nordcan.R: a new tool for federated analysis and quality assurance of cancer registry data |
title_sort | nordcan.r: a new tool for federated analysis and quality assurance of cancer registry data |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10442944/ https://www.ncbi.nlm.nih.gov/pubmed/37614501 http://dx.doi.org/10.3389/fonc.2023.1098342 |
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