Cargando…
The complete chloroplast genome of Malvaviscus penduliflorus (Malvaceae)
In this study, we assembled the complete chloroplast (cp) genome of Malvaviscus penduliflorus using high-throughput Illumina sequencing reads. The resulting plastome assembly displayed a typical quadripartite structure with a total length of 160,332 bp, containing a pair of inverted repeat regions (...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10443977/ https://www.ncbi.nlm.nih.gov/pubmed/37614528 http://dx.doi.org/10.1080/23802359.2023.2246670 |
_version_ | 1785093954030534656 |
---|---|
author | Liu, Rong Xie, Li Wang, Dan |
author_facet | Liu, Rong Xie, Li Wang, Dan |
author_sort | Liu, Rong |
collection | PubMed |
description | In this study, we assembled the complete chloroplast (cp) genome of Malvaviscus penduliflorus using high-throughput Illumina sequencing reads. The resulting plastome assembly displayed a typical quadripartite structure with a total length of 160,332 bp, containing a pair of inverted repeat regions (IRs) of 26,313 bp separated by a large single-copy region (LSC) of 88,750 bp and a small single-copy region (SSC) of 18,956 bp. The M. penduliflorus cp genome contained 128 genes, and its overall GC content was 36.96%. Phylogenetic analysis among M. penduliflorus and five other Malvaceae species demonstrated that M. penduliflorus was closely related to Urena procumbens and Hibiscus cannabinus. The M. penduliflorus cp genome presented in this study will lay a good foundation for further genetic and genomic studies of the genus Malvaviscus as well as Malvaceae. |
format | Online Article Text |
id | pubmed-10443977 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-104439772023-08-23 The complete chloroplast genome of Malvaviscus penduliflorus (Malvaceae) Liu, Rong Xie, Li Wang, Dan Mitochondrial DNA B Resour Plastome Report In this study, we assembled the complete chloroplast (cp) genome of Malvaviscus penduliflorus using high-throughput Illumina sequencing reads. The resulting plastome assembly displayed a typical quadripartite structure with a total length of 160,332 bp, containing a pair of inverted repeat regions (IRs) of 26,313 bp separated by a large single-copy region (LSC) of 88,750 bp and a small single-copy region (SSC) of 18,956 bp. The M. penduliflorus cp genome contained 128 genes, and its overall GC content was 36.96%. Phylogenetic analysis among M. penduliflorus and five other Malvaceae species demonstrated that M. penduliflorus was closely related to Urena procumbens and Hibiscus cannabinus. The M. penduliflorus cp genome presented in this study will lay a good foundation for further genetic and genomic studies of the genus Malvaviscus as well as Malvaceae. Taylor & Francis 2023-08-21 /pmc/articles/PMC10443977/ /pubmed/37614528 http://dx.doi.org/10.1080/23802359.2023.2246670 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Plastome Report Liu, Rong Xie, Li Wang, Dan The complete chloroplast genome of Malvaviscus penduliflorus (Malvaceae) |
title | The complete chloroplast genome of Malvaviscus penduliflorus (Malvaceae) |
title_full | The complete chloroplast genome of Malvaviscus penduliflorus (Malvaceae) |
title_fullStr | The complete chloroplast genome of Malvaviscus penduliflorus (Malvaceae) |
title_full_unstemmed | The complete chloroplast genome of Malvaviscus penduliflorus (Malvaceae) |
title_short | The complete chloroplast genome of Malvaviscus penduliflorus (Malvaceae) |
title_sort | complete chloroplast genome of malvaviscus penduliflorus (malvaceae) |
topic | Plastome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10443977/ https://www.ncbi.nlm.nih.gov/pubmed/37614528 http://dx.doi.org/10.1080/23802359.2023.2246670 |
work_keys_str_mv | AT liurong thecompletechloroplastgenomeofmalvaviscuspenduliflorusmalvaceae AT xieli thecompletechloroplastgenomeofmalvaviscuspenduliflorusmalvaceae AT wangdan thecompletechloroplastgenomeofmalvaviscuspenduliflorusmalvaceae AT liurong completechloroplastgenomeofmalvaviscuspenduliflorusmalvaceae AT xieli completechloroplastgenomeofmalvaviscuspenduliflorusmalvaceae AT wangdan completechloroplastgenomeofmalvaviscuspenduliflorusmalvaceae |