Cargando…

A large public dataset of annotated clinical MRIs and metadata of patients with acute stroke

To extract meaningful and reproducible models of brain function from stroke images, for both clinical and research proposes, is a daunting task severely hindered by the great variability of lesion frequency and patterns. Large datasets are therefore imperative, as well as fully automated image post-...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Chin-Fu, Leigh, Richard, Johnson, Brenda, Urrutia, Victor, Hsu, Johnny, Xu, Xin, Li, Xin, Mori, Susumu, Hillis, Argye E., Faria, Andreia V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10444746/
https://www.ncbi.nlm.nih.gov/pubmed/37607929
http://dx.doi.org/10.1038/s41597-023-02457-9
_version_ 1785094018176122880
author Liu, Chin-Fu
Leigh, Richard
Johnson, Brenda
Urrutia, Victor
Hsu, Johnny
Xu, Xin
Li, Xin
Mori, Susumu
Hillis, Argye E.
Faria, Andreia V.
author_facet Liu, Chin-Fu
Leigh, Richard
Johnson, Brenda
Urrutia, Victor
Hsu, Johnny
Xu, Xin
Li, Xin
Mori, Susumu
Hillis, Argye E.
Faria, Andreia V.
author_sort Liu, Chin-Fu
collection PubMed
description To extract meaningful and reproducible models of brain function from stroke images, for both clinical and research proposes, is a daunting task severely hindered by the great variability of lesion frequency and patterns. Large datasets are therefore imperative, as well as fully automated image post-processing tools to analyze them. The development of such tools, particularly with artificial intelligence, is highly dependent on the availability of large datasets to model training and testing. We present a public dataset of 2,888 multimodal clinical MRIs of patients with acute and early subacute stroke, with manual lesion segmentation, and metadata. The dataset provides high quality, large scale, human-supervised knowledge to feed artificial intelligence models and enable further development of tools to automate several tasks that currently rely on human labor, such as lesion segmentation, labeling, calculation of disease-relevant scores, and lesion-based studies relating function to frequency lesion maps.
format Online
Article
Text
id pubmed-10444746
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-104447462023-08-24 A large public dataset of annotated clinical MRIs and metadata of patients with acute stroke Liu, Chin-Fu Leigh, Richard Johnson, Brenda Urrutia, Victor Hsu, Johnny Xu, Xin Li, Xin Mori, Susumu Hillis, Argye E. Faria, Andreia V. Sci Data Data Descriptor To extract meaningful and reproducible models of brain function from stroke images, for both clinical and research proposes, is a daunting task severely hindered by the great variability of lesion frequency and patterns. Large datasets are therefore imperative, as well as fully automated image post-processing tools to analyze them. The development of such tools, particularly with artificial intelligence, is highly dependent on the availability of large datasets to model training and testing. We present a public dataset of 2,888 multimodal clinical MRIs of patients with acute and early subacute stroke, with manual lesion segmentation, and metadata. The dataset provides high quality, large scale, human-supervised knowledge to feed artificial intelligence models and enable further development of tools to automate several tasks that currently rely on human labor, such as lesion segmentation, labeling, calculation of disease-relevant scores, and lesion-based studies relating function to frequency lesion maps. Nature Publishing Group UK 2023-08-22 /pmc/articles/PMC10444746/ /pubmed/37607929 http://dx.doi.org/10.1038/s41597-023-02457-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Liu, Chin-Fu
Leigh, Richard
Johnson, Brenda
Urrutia, Victor
Hsu, Johnny
Xu, Xin
Li, Xin
Mori, Susumu
Hillis, Argye E.
Faria, Andreia V.
A large public dataset of annotated clinical MRIs and metadata of patients with acute stroke
title A large public dataset of annotated clinical MRIs and metadata of patients with acute stroke
title_full A large public dataset of annotated clinical MRIs and metadata of patients with acute stroke
title_fullStr A large public dataset of annotated clinical MRIs and metadata of patients with acute stroke
title_full_unstemmed A large public dataset of annotated clinical MRIs and metadata of patients with acute stroke
title_short A large public dataset of annotated clinical MRIs and metadata of patients with acute stroke
title_sort large public dataset of annotated clinical mris and metadata of patients with acute stroke
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10444746/
https://www.ncbi.nlm.nih.gov/pubmed/37607929
http://dx.doi.org/10.1038/s41597-023-02457-9
work_keys_str_mv AT liuchinfu alargepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT leighrichard alargepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT johnsonbrenda alargepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT urrutiavictor alargepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT hsujohnny alargepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT xuxin alargepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT lixin alargepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT morisusumu alargepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT hillisargyee alargepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT fariaandreiav alargepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT liuchinfu largepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT leighrichard largepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT johnsonbrenda largepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT urrutiavictor largepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT hsujohnny largepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT xuxin largepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT lixin largepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT morisusumu largepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT hillisargyee largepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke
AT fariaandreiav largepublicdatasetofannotatedclinicalmrisandmetadataofpatientswithacutestroke