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Wolf genetic diversity compared across Europe using the yardstick method

Integrating data across studies with traditional microsatellite genetic markers requires careful calibration and represents an obstacle for investigation of wide-ranging species where populations require transboundary management. We used the “yardstick” method to compare results published across Eur...

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Autores principales: Jan, Maja, Stronen, Astrid Vik, Boljte, Barbara, Černe, Rok, Huber, Đuro, Iosif, Ruben, Kljun, Franc, Konec, Marjeta, Kos, Ivan, Krofel, Miha, Kusak, Josip, Luštrik, Roman, Majić Skrbinšek, Aleksandra, Promberger–Füerpass, Barbara, Potočnik, Hubert, Rigg, Robin, Trontelj, Peter, Skrbinšek, Tomaž
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10444868/
https://www.ncbi.nlm.nih.gov/pubmed/37608038
http://dx.doi.org/10.1038/s41598-023-40834-x
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author Jan, Maja
Stronen, Astrid Vik
Boljte, Barbara
Černe, Rok
Huber, Đuro
Iosif, Ruben
Kljun, Franc
Konec, Marjeta
Kos, Ivan
Krofel, Miha
Kusak, Josip
Luštrik, Roman
Majić Skrbinšek, Aleksandra
Promberger–Füerpass, Barbara
Potočnik, Hubert
Rigg, Robin
Trontelj, Peter
Skrbinšek, Tomaž
author_facet Jan, Maja
Stronen, Astrid Vik
Boljte, Barbara
Černe, Rok
Huber, Đuro
Iosif, Ruben
Kljun, Franc
Konec, Marjeta
Kos, Ivan
Krofel, Miha
Kusak, Josip
Luštrik, Roman
Majić Skrbinšek, Aleksandra
Promberger–Füerpass, Barbara
Potočnik, Hubert
Rigg, Robin
Trontelj, Peter
Skrbinšek, Tomaž
author_sort Jan, Maja
collection PubMed
description Integrating data across studies with traditional microsatellite genetic markers requires careful calibration and represents an obstacle for investigation of wide-ranging species where populations require transboundary management. We used the “yardstick” method to compare results published across Europe since 2002 and new wolf (Canis lupus) genetic profiles from the Carpathian Mountains in Central Europe and the Dinaric Mountains in Southeastern Europe, with the latter as our reference population. We compared each population with Dinaric wolves, considering only shared markers (range 4–17). For each population, we calculated standard genetic diversity indices plus calibrated heterozygosity (Hec) and allelic richness (Ac). Hec and Ac in Dinaric (0.704 and 9.394) and Carpathian wolves (0.695 and 7.023) were comparable to those observed in other large and mid-sized European populations, but smaller than those of northeastern Europe. Major discrepancies in marker choices among some studies made comparisons more difficult. However, the yardstick method, including the new measures of Hec and Ac, provided a direct comparison of genetic diversity values among wolf populations and an intuitive interpretation of the results. The yardstick method thus permitted the integration of diverse sources of publicly available microsatellite data for spatiotemporal genetic monitoring of evolutionary potential.
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spelling pubmed-104448682023-08-24 Wolf genetic diversity compared across Europe using the yardstick method Jan, Maja Stronen, Astrid Vik Boljte, Barbara Černe, Rok Huber, Đuro Iosif, Ruben Kljun, Franc Konec, Marjeta Kos, Ivan Krofel, Miha Kusak, Josip Luštrik, Roman Majić Skrbinšek, Aleksandra Promberger–Füerpass, Barbara Potočnik, Hubert Rigg, Robin Trontelj, Peter Skrbinšek, Tomaž Sci Rep Article Integrating data across studies with traditional microsatellite genetic markers requires careful calibration and represents an obstacle for investigation of wide-ranging species where populations require transboundary management. We used the “yardstick” method to compare results published across Europe since 2002 and new wolf (Canis lupus) genetic profiles from the Carpathian Mountains in Central Europe and the Dinaric Mountains in Southeastern Europe, with the latter as our reference population. We compared each population with Dinaric wolves, considering only shared markers (range 4–17). For each population, we calculated standard genetic diversity indices plus calibrated heterozygosity (Hec) and allelic richness (Ac). Hec and Ac in Dinaric (0.704 and 9.394) and Carpathian wolves (0.695 and 7.023) were comparable to those observed in other large and mid-sized European populations, but smaller than those of northeastern Europe. Major discrepancies in marker choices among some studies made comparisons more difficult. However, the yardstick method, including the new measures of Hec and Ac, provided a direct comparison of genetic diversity values among wolf populations and an intuitive interpretation of the results. The yardstick method thus permitted the integration of diverse sources of publicly available microsatellite data for spatiotemporal genetic monitoring of evolutionary potential. Nature Publishing Group UK 2023-08-22 /pmc/articles/PMC10444868/ /pubmed/37608038 http://dx.doi.org/10.1038/s41598-023-40834-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Jan, Maja
Stronen, Astrid Vik
Boljte, Barbara
Černe, Rok
Huber, Đuro
Iosif, Ruben
Kljun, Franc
Konec, Marjeta
Kos, Ivan
Krofel, Miha
Kusak, Josip
Luštrik, Roman
Majić Skrbinšek, Aleksandra
Promberger–Füerpass, Barbara
Potočnik, Hubert
Rigg, Robin
Trontelj, Peter
Skrbinšek, Tomaž
Wolf genetic diversity compared across Europe using the yardstick method
title Wolf genetic diversity compared across Europe using the yardstick method
title_full Wolf genetic diversity compared across Europe using the yardstick method
title_fullStr Wolf genetic diversity compared across Europe using the yardstick method
title_full_unstemmed Wolf genetic diversity compared across Europe using the yardstick method
title_short Wolf genetic diversity compared across Europe using the yardstick method
title_sort wolf genetic diversity compared across europe using the yardstick method
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10444868/
https://www.ncbi.nlm.nih.gov/pubmed/37608038
http://dx.doi.org/10.1038/s41598-023-40834-x
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