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Atomic-level structure determination of amorphous molecular solids by NMR
Structure determination of amorphous materials remains challenging, owing to the disorder inherent to these materials. Nuclear magnetic resonance (NMR) powder crystallography is a powerful method to determine the structure of molecular solids, but disorder leads to a high degree of overlap between m...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10447443/ https://www.ncbi.nlm.nih.gov/pubmed/37612269 http://dx.doi.org/10.1038/s41467-023-40853-2 |
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author | Cordova, Manuel Moutzouri, Pinelopi Nilsson Lill, Sten O. Cousen, Alexander Kearns, Martin Norberg, Stefan T. Svensk Ankarberg, Anna McCabe, James Pinon, Arthur C. Schantz, Staffan Emsley, Lyndon |
author_facet | Cordova, Manuel Moutzouri, Pinelopi Nilsson Lill, Sten O. Cousen, Alexander Kearns, Martin Norberg, Stefan T. Svensk Ankarberg, Anna McCabe, James Pinon, Arthur C. Schantz, Staffan Emsley, Lyndon |
author_sort | Cordova, Manuel |
collection | PubMed |
description | Structure determination of amorphous materials remains challenging, owing to the disorder inherent to these materials. Nuclear magnetic resonance (NMR) powder crystallography is a powerful method to determine the structure of molecular solids, but disorder leads to a high degree of overlap between measured signals, and prevents the unambiguous identification of a single modeled periodic structure as representative of the whole material. Here, we determine the atomic-level ensemble structure of the amorphous form of the drug AZD4625 by combining solid-state NMR experiments with molecular dynamics (MD) simulations and machine-learned chemical shifts. By considering the combined shifts of all (1)H and (13)C atomic sites in the molecule, we determine the structure of the amorphous form by identifying an ensemble of local molecular environments that are in agreement with experiment. We then extract and analyze preferred conformations and intermolecular interactions in the amorphous sample in terms of the stabilization of the amorphous form of the drug. |
format | Online Article Text |
id | pubmed-10447443 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-104474432023-08-25 Atomic-level structure determination of amorphous molecular solids by NMR Cordova, Manuel Moutzouri, Pinelopi Nilsson Lill, Sten O. Cousen, Alexander Kearns, Martin Norberg, Stefan T. Svensk Ankarberg, Anna McCabe, James Pinon, Arthur C. Schantz, Staffan Emsley, Lyndon Nat Commun Article Structure determination of amorphous materials remains challenging, owing to the disorder inherent to these materials. Nuclear magnetic resonance (NMR) powder crystallography is a powerful method to determine the structure of molecular solids, but disorder leads to a high degree of overlap between measured signals, and prevents the unambiguous identification of a single modeled periodic structure as representative of the whole material. Here, we determine the atomic-level ensemble structure of the amorphous form of the drug AZD4625 by combining solid-state NMR experiments with molecular dynamics (MD) simulations and machine-learned chemical shifts. By considering the combined shifts of all (1)H and (13)C atomic sites in the molecule, we determine the structure of the amorphous form by identifying an ensemble of local molecular environments that are in agreement with experiment. We then extract and analyze preferred conformations and intermolecular interactions in the amorphous sample in terms of the stabilization of the amorphous form of the drug. Nature Publishing Group UK 2023-08-23 /pmc/articles/PMC10447443/ /pubmed/37612269 http://dx.doi.org/10.1038/s41467-023-40853-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Cordova, Manuel Moutzouri, Pinelopi Nilsson Lill, Sten O. Cousen, Alexander Kearns, Martin Norberg, Stefan T. Svensk Ankarberg, Anna McCabe, James Pinon, Arthur C. Schantz, Staffan Emsley, Lyndon Atomic-level structure determination of amorphous molecular solids by NMR |
title | Atomic-level structure determination of amorphous molecular solids by NMR |
title_full | Atomic-level structure determination of amorphous molecular solids by NMR |
title_fullStr | Atomic-level structure determination of amorphous molecular solids by NMR |
title_full_unstemmed | Atomic-level structure determination of amorphous molecular solids by NMR |
title_short | Atomic-level structure determination of amorphous molecular solids by NMR |
title_sort | atomic-level structure determination of amorphous molecular solids by nmr |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10447443/ https://www.ncbi.nlm.nih.gov/pubmed/37612269 http://dx.doi.org/10.1038/s41467-023-40853-2 |
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