Cargando…

miRNA profiling as a complementary diagnostic tool for amyotrophic lateral sclerosis

Amyotrophic lateral sclerosis (ALS), the most prevalent motor neuron disease characterized by its complex genetic structure, lacks a single diagnostic test capable of providing a conclusive diagnosis. In order to demonstrate the potential for genetic diagnosis and shed light on the pathogenic role o...

Descripción completa

Detalles Bibliográficos
Autores principales: Cheng, Jack, Ho, Wen-Kuang, Wu, Bor-Tsang, Liu, Hsin-Ping, Lin, Wei-Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10447559/
https://www.ncbi.nlm.nih.gov/pubmed/37612427
http://dx.doi.org/10.1038/s41598-023-40879-y
_version_ 1785094579200983040
author Cheng, Jack
Ho, Wen-Kuang
Wu, Bor-Tsang
Liu, Hsin-Ping
Lin, Wei-Yong
author_facet Cheng, Jack
Ho, Wen-Kuang
Wu, Bor-Tsang
Liu, Hsin-Ping
Lin, Wei-Yong
author_sort Cheng, Jack
collection PubMed
description Amyotrophic lateral sclerosis (ALS), the most prevalent motor neuron disease characterized by its complex genetic structure, lacks a single diagnostic test capable of providing a conclusive diagnosis. In order to demonstrate the potential for genetic diagnosis and shed light on the pathogenic role of miRNAs in ALS, we developed an ALS diagnostic rule by training the model using 80% of a miRNA profiling dataset consisting of 253 ALS samples and 103 control samples. Subsequently, we validated the diagnostic rule using the remaining 20% of unseen samples. The diagnostic rule we developed includes miR-205-5p, miR-206, miR-376a-5p, miR-412-5p, miR-3927-3p, miR-4701-3p, miR-6763-5p, and miR-6801-3p. Remarkably, the rule achieved an 82% true positive rate and a 73% true negative rate when predicting the unseen samples. Furthermore, the identified miRNAs target 21 genes in the PI3K-Akt pathway and 27 genes in the ALS pathway, including notable genes such as BCL2, NEFH, and OPTN. We propose that miRNA profiling may serve as a complementary diagnostic tool to supplement the clinical presentation and aid in the early recognition of ALS.
format Online
Article
Text
id pubmed-10447559
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-104475592023-08-25 miRNA profiling as a complementary diagnostic tool for amyotrophic lateral sclerosis Cheng, Jack Ho, Wen-Kuang Wu, Bor-Tsang Liu, Hsin-Ping Lin, Wei-Yong Sci Rep Article Amyotrophic lateral sclerosis (ALS), the most prevalent motor neuron disease characterized by its complex genetic structure, lacks a single diagnostic test capable of providing a conclusive diagnosis. In order to demonstrate the potential for genetic diagnosis and shed light on the pathogenic role of miRNAs in ALS, we developed an ALS diagnostic rule by training the model using 80% of a miRNA profiling dataset consisting of 253 ALS samples and 103 control samples. Subsequently, we validated the diagnostic rule using the remaining 20% of unseen samples. The diagnostic rule we developed includes miR-205-5p, miR-206, miR-376a-5p, miR-412-5p, miR-3927-3p, miR-4701-3p, miR-6763-5p, and miR-6801-3p. Remarkably, the rule achieved an 82% true positive rate and a 73% true negative rate when predicting the unseen samples. Furthermore, the identified miRNAs target 21 genes in the PI3K-Akt pathway and 27 genes in the ALS pathway, including notable genes such as BCL2, NEFH, and OPTN. We propose that miRNA profiling may serve as a complementary diagnostic tool to supplement the clinical presentation and aid in the early recognition of ALS. Nature Publishing Group UK 2023-08-23 /pmc/articles/PMC10447559/ /pubmed/37612427 http://dx.doi.org/10.1038/s41598-023-40879-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Cheng, Jack
Ho, Wen-Kuang
Wu, Bor-Tsang
Liu, Hsin-Ping
Lin, Wei-Yong
miRNA profiling as a complementary diagnostic tool for amyotrophic lateral sclerosis
title miRNA profiling as a complementary diagnostic tool for amyotrophic lateral sclerosis
title_full miRNA profiling as a complementary diagnostic tool for amyotrophic lateral sclerosis
title_fullStr miRNA profiling as a complementary diagnostic tool for amyotrophic lateral sclerosis
title_full_unstemmed miRNA profiling as a complementary diagnostic tool for amyotrophic lateral sclerosis
title_short miRNA profiling as a complementary diagnostic tool for amyotrophic lateral sclerosis
title_sort mirna profiling as a complementary diagnostic tool for amyotrophic lateral sclerosis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10447559/
https://www.ncbi.nlm.nih.gov/pubmed/37612427
http://dx.doi.org/10.1038/s41598-023-40879-y
work_keys_str_mv AT chengjack mirnaprofilingasacomplementarydiagnostictoolforamyotrophiclateralsclerosis
AT howenkuang mirnaprofilingasacomplementarydiagnostictoolforamyotrophiclateralsclerosis
AT wubortsang mirnaprofilingasacomplementarydiagnostictoolforamyotrophiclateralsclerosis
AT liuhsinping mirnaprofilingasacomplementarydiagnostictoolforamyotrophiclateralsclerosis
AT linweiyong mirnaprofilingasacomplementarydiagnostictoolforamyotrophiclateralsclerosis