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Memory-friendly fixed-point iteration method for nonlinear surface mode oscillations of acoustically driven bubbles: from the perspective of high-performance GPU programming
A fixed-point iteration technique is presented to handle the implicit nature of the governing equations of nonlinear surface mode oscillations of acoustically excited microbubbles. The model is adopted from the theoretical work of Shaw [1], where the dynamics of the mean bubble radius and the surfac...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10448217/ https://www.ncbi.nlm.nih.gov/pubmed/37574642 http://dx.doi.org/10.1016/j.ultsonch.2023.106546 |
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author | Kalmár, Péter Hegedűs, Ferenc Nagy, Dániel Sándor, Levente Klapcsik, Kálmán |
author_facet | Kalmár, Péter Hegedűs, Ferenc Nagy, Dániel Sándor, Levente Klapcsik, Kálmán |
author_sort | Kalmár, Péter |
collection | PubMed |
description | A fixed-point iteration technique is presented to handle the implicit nature of the governing equations of nonlinear surface mode oscillations of acoustically excited microbubbles. The model is adopted from the theoretical work of Shaw [1], where the dynamics of the mean bubble radius and the surface modes are bi-directionally coupled via nonlinear terms. The model comprises a set of second-order ordinary differential equations. It extends the classic Keller–Miksis equation and the linearized dynamical equations for each surface mode. Only the implicit parts (containing the second derivatives) are reevaluated during the iteration process. The performance of the technique is tested at various parameter combinations. The majority of the test cases needs only a single reevaluation to achieve [Formula: see text] error. Although the arithmetic operation count is higher than the Gauss elimination, due to its memory-friendly matrix-free nature, it is a viable alternative for high-performance GPU computations of massive parameter studies. |
format | Online Article Text |
id | pubmed-10448217 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-104482172023-08-25 Memory-friendly fixed-point iteration method for nonlinear surface mode oscillations of acoustically driven bubbles: from the perspective of high-performance GPU programming Kalmár, Péter Hegedűs, Ferenc Nagy, Dániel Sándor, Levente Klapcsik, Kálmán Ultrason Sonochem Original Research Article A fixed-point iteration technique is presented to handle the implicit nature of the governing equations of nonlinear surface mode oscillations of acoustically excited microbubbles. The model is adopted from the theoretical work of Shaw [1], where the dynamics of the mean bubble radius and the surface modes are bi-directionally coupled via nonlinear terms. The model comprises a set of second-order ordinary differential equations. It extends the classic Keller–Miksis equation and the linearized dynamical equations for each surface mode. Only the implicit parts (containing the second derivatives) are reevaluated during the iteration process. The performance of the technique is tested at various parameter combinations. The majority of the test cases needs only a single reevaluation to achieve [Formula: see text] error. Although the arithmetic operation count is higher than the Gauss elimination, due to its memory-friendly matrix-free nature, it is a viable alternative for high-performance GPU computations of massive parameter studies. Elsevier 2023-08-04 /pmc/articles/PMC10448217/ /pubmed/37574642 http://dx.doi.org/10.1016/j.ultsonch.2023.106546 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Original Research Article Kalmár, Péter Hegedűs, Ferenc Nagy, Dániel Sándor, Levente Klapcsik, Kálmán Memory-friendly fixed-point iteration method for nonlinear surface mode oscillations of acoustically driven bubbles: from the perspective of high-performance GPU programming |
title | Memory-friendly fixed-point iteration method for nonlinear surface mode oscillations of acoustically driven bubbles: from the perspective of high-performance GPU programming |
title_full | Memory-friendly fixed-point iteration method for nonlinear surface mode oscillations of acoustically driven bubbles: from the perspective of high-performance GPU programming |
title_fullStr | Memory-friendly fixed-point iteration method for nonlinear surface mode oscillations of acoustically driven bubbles: from the perspective of high-performance GPU programming |
title_full_unstemmed | Memory-friendly fixed-point iteration method for nonlinear surface mode oscillations of acoustically driven bubbles: from the perspective of high-performance GPU programming |
title_short | Memory-friendly fixed-point iteration method for nonlinear surface mode oscillations of acoustically driven bubbles: from the perspective of high-performance GPU programming |
title_sort | memory-friendly fixed-point iteration method for nonlinear surface mode oscillations of acoustically driven bubbles: from the perspective of high-performance gpu programming |
topic | Original Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10448217/ https://www.ncbi.nlm.nih.gov/pubmed/37574642 http://dx.doi.org/10.1016/j.ultsonch.2023.106546 |
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