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Exploring the feasibility of tensor decomposition for analysis of fNIRS signals: a comparative study with grand averaging method
The analysis of functional near-infrared spectroscopy (fNIRS) signals has not kept pace with the increased use of fNIRS in the behavioral and brain sciences. The popular grand averaging method collapses the oxygenated hemoglobin data within a predefined time of interest window and across multiple ch...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10448703/ https://www.ncbi.nlm.nih.gov/pubmed/37638308 http://dx.doi.org/10.3389/fnins.2023.1180293 |
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author | Chan, Jasmine Y. Hssayeni, Murtadha D. Wilcox, Teresa Ghoraani, Behnaz |
author_facet | Chan, Jasmine Y. Hssayeni, Murtadha D. Wilcox, Teresa Ghoraani, Behnaz |
author_sort | Chan, Jasmine Y. |
collection | PubMed |
description | The analysis of functional near-infrared spectroscopy (fNIRS) signals has not kept pace with the increased use of fNIRS in the behavioral and brain sciences. The popular grand averaging method collapses the oxygenated hemoglobin data within a predefined time of interest window and across multiple channels within a region of interest, potentially leading to a loss of important temporal and spatial information. On the other hand, the tensor decomposition method can reveal patterns in the data without making prior assumptions of the hemodynamic response and without losing temporal and spatial information. The aim of the current study was to examine whether the tensor decomposition method could identify significant effects and novel patterns compared to the commonly used grand averaging method for fNIRS signal analysis. We used two infant fNIRS datasets and applied tensor decomposition (i.e., canonical polyadic and Tucker decompositions) to analyze the significant differences in the hemodynamic response patterns across conditions. The codes are publicly available on GitHub. Bayesian analyses were performed to understand interaction effects. The results from the tensor decomposition method replicated the findings from the grand averaging method and uncovered additional patterns not detected by the grand averaging method. Our findings demonstrate that tensor decomposition is a feasible alternative method for analyzing fNIRS signals, offering a more comprehensive understanding of the data and its underlying patterns. |
format | Online Article Text |
id | pubmed-10448703 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104487032023-08-25 Exploring the feasibility of tensor decomposition for analysis of fNIRS signals: a comparative study with grand averaging method Chan, Jasmine Y. Hssayeni, Murtadha D. Wilcox, Teresa Ghoraani, Behnaz Front Neurosci Neuroscience The analysis of functional near-infrared spectroscopy (fNIRS) signals has not kept pace with the increased use of fNIRS in the behavioral and brain sciences. The popular grand averaging method collapses the oxygenated hemoglobin data within a predefined time of interest window and across multiple channels within a region of interest, potentially leading to a loss of important temporal and spatial information. On the other hand, the tensor decomposition method can reveal patterns in the data without making prior assumptions of the hemodynamic response and without losing temporal and spatial information. The aim of the current study was to examine whether the tensor decomposition method could identify significant effects and novel patterns compared to the commonly used grand averaging method for fNIRS signal analysis. We used two infant fNIRS datasets and applied tensor decomposition (i.e., canonical polyadic and Tucker decompositions) to analyze the significant differences in the hemodynamic response patterns across conditions. The codes are publicly available on GitHub. Bayesian analyses were performed to understand interaction effects. The results from the tensor decomposition method replicated the findings from the grand averaging method and uncovered additional patterns not detected by the grand averaging method. Our findings demonstrate that tensor decomposition is a feasible alternative method for analyzing fNIRS signals, offering a more comprehensive understanding of the data and its underlying patterns. Frontiers Media S.A. 2023-08-10 /pmc/articles/PMC10448703/ /pubmed/37638308 http://dx.doi.org/10.3389/fnins.2023.1180293 Text en Copyright © 2023 Chan, Hssayeni, Wilcox and Ghoraani. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Chan, Jasmine Y. Hssayeni, Murtadha D. Wilcox, Teresa Ghoraani, Behnaz Exploring the feasibility of tensor decomposition for analysis of fNIRS signals: a comparative study with grand averaging method |
title | Exploring the feasibility of tensor decomposition for analysis of fNIRS signals: a comparative study with grand averaging method |
title_full | Exploring the feasibility of tensor decomposition for analysis of fNIRS signals: a comparative study with grand averaging method |
title_fullStr | Exploring the feasibility of tensor decomposition for analysis of fNIRS signals: a comparative study with grand averaging method |
title_full_unstemmed | Exploring the feasibility of tensor decomposition for analysis of fNIRS signals: a comparative study with grand averaging method |
title_short | Exploring the feasibility of tensor decomposition for analysis of fNIRS signals: a comparative study with grand averaging method |
title_sort | exploring the feasibility of tensor decomposition for analysis of fnirs signals: a comparative study with grand averaging method |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10448703/ https://www.ncbi.nlm.nih.gov/pubmed/37638308 http://dx.doi.org/10.3389/fnins.2023.1180293 |
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