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Comprehensive analyses reveal the prognosis and biological function roles of chromatin regulators in lung adenocarcinoma

The present study explored the prognosis and biological function roles of chromatin regulators (CRs) in patients with lung adenocarcinoma (LUAD). Using transcriptome profile and clinical follow-up data of LUAD dataset, we explored the molecular classification, developed, and validated a CR prognosti...

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Autores principales: Yang, Baishuang, Rong, Xueyao, Jiang, Chen, Long, Meihua, Liu, Aibin, Chen, Qiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10449281/
https://www.ncbi.nlm.nih.gov/pubmed/37155150
http://dx.doi.org/10.18632/aging.204693
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author Yang, Baishuang
Rong, Xueyao
Jiang, Chen
Long, Meihua
Liu, Aibin
Chen, Qiong
author_facet Yang, Baishuang
Rong, Xueyao
Jiang, Chen
Long, Meihua
Liu, Aibin
Chen, Qiong
author_sort Yang, Baishuang
collection PubMed
description The present study explored the prognosis and biological function roles of chromatin regulators (CRs) in patients with lung adenocarcinoma (LUAD). Using transcriptome profile and clinical follow-up data of LUAD dataset, we explored the molecular classification, developed, and validated a CR prognostic model, built an individual risk scoring system in LUAD, and compared the clinical and molecular characteristics between different subtypes and risk stratifications. We investigated the chemotherapy sensitivity and predicted potential immunotherapy response. Lastly, we collected the clinical samples and validated the prognosis and potential function role of NAPS2. Our study indicated that LUAD patients could be classified into two subtypes that had obviously different clinical background and molecular features. We constructed a prognostic model with eight CR genes, which was well validated in several other population cohort. We built high- and low-risk stratifications for LUAD patients. Patients from high-risk group were totally different from low-risk groups in clinical, biological function, gene mutation, microenvironment, and immune infiltration levels. We idented several potential molecular compounds for high-risk group treatment. We predicted that high-risk group may have poor immunotherapy response. We finally found that Neuronal PAS Domain Protein 2 (NPAS2) involved in the progression of LUAD via regulating cell adhesion. Our study indicated that CR involved in the progression of LUAD and affect their prognosis. Different therapeutic strategies should be developed for different molecular subtypes and risk stratifications. Our comprehensive analyses uncover specific determinants of CRs in LUAD and provides implications for investigating disease-associated CRs.
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spelling pubmed-104492812023-08-25 Comprehensive analyses reveal the prognosis and biological function roles of chromatin regulators in lung adenocarcinoma Yang, Baishuang Rong, Xueyao Jiang, Chen Long, Meihua Liu, Aibin Chen, Qiong Aging (Albany NY) Research Paper The present study explored the prognosis and biological function roles of chromatin regulators (CRs) in patients with lung adenocarcinoma (LUAD). Using transcriptome profile and clinical follow-up data of LUAD dataset, we explored the molecular classification, developed, and validated a CR prognostic model, built an individual risk scoring system in LUAD, and compared the clinical and molecular characteristics between different subtypes and risk stratifications. We investigated the chemotherapy sensitivity and predicted potential immunotherapy response. Lastly, we collected the clinical samples and validated the prognosis and potential function role of NAPS2. Our study indicated that LUAD patients could be classified into two subtypes that had obviously different clinical background and molecular features. We constructed a prognostic model with eight CR genes, which was well validated in several other population cohort. We built high- and low-risk stratifications for LUAD patients. Patients from high-risk group were totally different from low-risk groups in clinical, biological function, gene mutation, microenvironment, and immune infiltration levels. We idented several potential molecular compounds for high-risk group treatment. We predicted that high-risk group may have poor immunotherapy response. We finally found that Neuronal PAS Domain Protein 2 (NPAS2) involved in the progression of LUAD via regulating cell adhesion. Our study indicated that CR involved in the progression of LUAD and affect their prognosis. Different therapeutic strategies should be developed for different molecular subtypes and risk stratifications. Our comprehensive analyses uncover specific determinants of CRs in LUAD and provides implications for investigating disease-associated CRs. Impact Journals 2023-05-05 /pmc/articles/PMC10449281/ /pubmed/37155150 http://dx.doi.org/10.18632/aging.204693 Text en Copyright: © 2023 Yang et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Yang, Baishuang
Rong, Xueyao
Jiang, Chen
Long, Meihua
Liu, Aibin
Chen, Qiong
Comprehensive analyses reveal the prognosis and biological function roles of chromatin regulators in lung adenocarcinoma
title Comprehensive analyses reveal the prognosis and biological function roles of chromatin regulators in lung adenocarcinoma
title_full Comprehensive analyses reveal the prognosis and biological function roles of chromatin regulators in lung adenocarcinoma
title_fullStr Comprehensive analyses reveal the prognosis and biological function roles of chromatin regulators in lung adenocarcinoma
title_full_unstemmed Comprehensive analyses reveal the prognosis and biological function roles of chromatin regulators in lung adenocarcinoma
title_short Comprehensive analyses reveal the prognosis and biological function roles of chromatin regulators in lung adenocarcinoma
title_sort comprehensive analyses reveal the prognosis and biological function roles of chromatin regulators in lung adenocarcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10449281/
https://www.ncbi.nlm.nih.gov/pubmed/37155150
http://dx.doi.org/10.18632/aging.204693
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