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Exonic mutations in cell–cell adhesion may contribute to CADASIL-related CSVD pathology
Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) is a condition caused by mutations in NOTCH3 and results in a phenotype characterised by recurrent strokes, vascular dementia and migraines. Whilst a genetic basis for the disease is known, the molec...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer Berlin Heidelberg
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10449969/ https://www.ncbi.nlm.nih.gov/pubmed/37422595 http://dx.doi.org/10.1007/s00439-023-02584-8 |
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author | Dunn, Paul J. Lea, Rodney A. Maksemous, Neven Smith, Robert A. Sutherland, Heidi G. Haupt, Larisa M. Griffiths, Lyn R. |
author_facet | Dunn, Paul J. Lea, Rodney A. Maksemous, Neven Smith, Robert A. Sutherland, Heidi G. Haupt, Larisa M. Griffiths, Lyn R. |
author_sort | Dunn, Paul J. |
collection | PubMed |
description | Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) is a condition caused by mutations in NOTCH3 and results in a phenotype characterised by recurrent strokes, vascular dementia and migraines. Whilst a genetic basis for the disease is known, the molecular mechanisms underpinning the pathology of CADASIL are still yet to be determined. Studies conducted at the Genomics Research Centre (GRC) have also identified that only 15–23% of individuals clinically suspected of CADASIL have mutations in NOTCH3. Based on this, whole exome sequencing was used to identify novel genetic variants for CADASIL-like cerebral small-vessel disease (CSVD). Analysis of functionally important variants in 50 individuals was investigated using overrepresentation tests in Gene ontology software to identify biological processes that are potentially affected in this group of patients. Further investigation of the genes in these processes was completed using the TRAPD software to identify if there is an increased number (burden) of mutations that are associated with CADASIL-like pathology. Results from this study identified that cell–cell adhesion genes were positively overrepresented in the PANTHER GO-slim database. TRAPD burden testing identified n = 15 genes that had a higher number of rare (MAF < 0.001) and predicted functionally relevant (SIFT < 0.05, PolyPhen > 0.8) mutations compared to the gnomAD v2.1.1 exome control dataset. Furthermore, these results identified ARVCF, GPR17, PTPRS, and CELSR1 as novel candidate genes in CADASIL-related pathology. This study identified a novel process that may be playing a role in the vascular damage related to CADASIL-related CSVD and implicated n = 15 genes in playing a role in the disease. |
format | Online Article Text |
id | pubmed-10449969 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-104499692023-08-26 Exonic mutations in cell–cell adhesion may contribute to CADASIL-related CSVD pathology Dunn, Paul J. Lea, Rodney A. Maksemous, Neven Smith, Robert A. Sutherland, Heidi G. Haupt, Larisa M. Griffiths, Lyn R. Hum Genet Original Investigation Cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL) is a condition caused by mutations in NOTCH3 and results in a phenotype characterised by recurrent strokes, vascular dementia and migraines. Whilst a genetic basis for the disease is known, the molecular mechanisms underpinning the pathology of CADASIL are still yet to be determined. Studies conducted at the Genomics Research Centre (GRC) have also identified that only 15–23% of individuals clinically suspected of CADASIL have mutations in NOTCH3. Based on this, whole exome sequencing was used to identify novel genetic variants for CADASIL-like cerebral small-vessel disease (CSVD). Analysis of functionally important variants in 50 individuals was investigated using overrepresentation tests in Gene ontology software to identify biological processes that are potentially affected in this group of patients. Further investigation of the genes in these processes was completed using the TRAPD software to identify if there is an increased number (burden) of mutations that are associated with CADASIL-like pathology. Results from this study identified that cell–cell adhesion genes were positively overrepresented in the PANTHER GO-slim database. TRAPD burden testing identified n = 15 genes that had a higher number of rare (MAF < 0.001) and predicted functionally relevant (SIFT < 0.05, PolyPhen > 0.8) mutations compared to the gnomAD v2.1.1 exome control dataset. Furthermore, these results identified ARVCF, GPR17, PTPRS, and CELSR1 as novel candidate genes in CADASIL-related pathology. This study identified a novel process that may be playing a role in the vascular damage related to CADASIL-related CSVD and implicated n = 15 genes in playing a role in the disease. Springer Berlin Heidelberg 2023-07-08 2023 /pmc/articles/PMC10449969/ /pubmed/37422595 http://dx.doi.org/10.1007/s00439-023-02584-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Investigation Dunn, Paul J. Lea, Rodney A. Maksemous, Neven Smith, Robert A. Sutherland, Heidi G. Haupt, Larisa M. Griffiths, Lyn R. Exonic mutations in cell–cell adhesion may contribute to CADASIL-related CSVD pathology |
title | Exonic mutations in cell–cell adhesion may contribute to CADASIL-related CSVD pathology |
title_full | Exonic mutations in cell–cell adhesion may contribute to CADASIL-related CSVD pathology |
title_fullStr | Exonic mutations in cell–cell adhesion may contribute to CADASIL-related CSVD pathology |
title_full_unstemmed | Exonic mutations in cell–cell adhesion may contribute to CADASIL-related CSVD pathology |
title_short | Exonic mutations in cell–cell adhesion may contribute to CADASIL-related CSVD pathology |
title_sort | exonic mutations in cell–cell adhesion may contribute to cadasil-related csvd pathology |
topic | Original Investigation |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10449969/ https://www.ncbi.nlm.nih.gov/pubmed/37422595 http://dx.doi.org/10.1007/s00439-023-02584-8 |
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