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YLC-assembly: large DNA assembly via yeast life cycle

As an enabling technique of synthetic biology, the scale of DNA assembly largely determines the scale of genetic manipulation. However, large DNA assembly technologies are generally cumbersome and inefficient. Here, we developed a YLC (yeast life cycle)-assembly method that enables in vivo iterative...

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Autores principales: He, Bo, Ma, Yuan, Tian, Fangfang, Zhao, Guang-Rong, Wu, Yi, Yuan, Ying-Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10450165/
https://www.ncbi.nlm.nih.gov/pubmed/37486765
http://dx.doi.org/10.1093/nar/gkad599
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author He, Bo
Ma, Yuan
Tian, Fangfang
Zhao, Guang-Rong
Wu, Yi
Yuan, Ying-Jin
author_facet He, Bo
Ma, Yuan
Tian, Fangfang
Zhao, Guang-Rong
Wu, Yi
Yuan, Ying-Jin
author_sort He, Bo
collection PubMed
description As an enabling technique of synthetic biology, the scale of DNA assembly largely determines the scale of genetic manipulation. However, large DNA assembly technologies are generally cumbersome and inefficient. Here, we developed a YLC (yeast life cycle)-assembly method that enables in vivo iterative assembly of large DNA by nesting cell-cell transfer of assembled DNA in the cycle of yeast mating and sporulation. Using this method, we successfully assembled a hundred-kilobase (kb)-sized endogenous yeast DNA and a megabase (Mb)-sized exogenous DNA. For each round, over 10(4) positive colonies per 10(7) cells could be obtained, with an accuracy ranging from 67% to 100%. Compared with other Mb-sized DNA assembly methods, this method exhibits a higher success rate with an easy-to-operate workflow that avoid in vitro operations of large DNA. YLC-assembly lowers the technical difficulty of Mb-sized DNA assembly and could be a valuable tool for large-scale genome engineering and synthetic genomics.
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spelling pubmed-104501652023-08-26 YLC-assembly: large DNA assembly via yeast life cycle He, Bo Ma, Yuan Tian, Fangfang Zhao, Guang-Rong Wu, Yi Yuan, Ying-Jin Nucleic Acids Res Synthetic Biology and Bioengineering As an enabling technique of synthetic biology, the scale of DNA assembly largely determines the scale of genetic manipulation. However, large DNA assembly technologies are generally cumbersome and inefficient. Here, we developed a YLC (yeast life cycle)-assembly method that enables in vivo iterative assembly of large DNA by nesting cell-cell transfer of assembled DNA in the cycle of yeast mating and sporulation. Using this method, we successfully assembled a hundred-kilobase (kb)-sized endogenous yeast DNA and a megabase (Mb)-sized exogenous DNA. For each round, over 10(4) positive colonies per 10(7) cells could be obtained, with an accuracy ranging from 67% to 100%. Compared with other Mb-sized DNA assembly methods, this method exhibits a higher success rate with an easy-to-operate workflow that avoid in vitro operations of large DNA. YLC-assembly lowers the technical difficulty of Mb-sized DNA assembly and could be a valuable tool for large-scale genome engineering and synthetic genomics. Oxford University Press 2023-07-24 /pmc/articles/PMC10450165/ /pubmed/37486765 http://dx.doi.org/10.1093/nar/gkad599 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Synthetic Biology and Bioengineering
He, Bo
Ma, Yuan
Tian, Fangfang
Zhao, Guang-Rong
Wu, Yi
Yuan, Ying-Jin
YLC-assembly: large DNA assembly via yeast life cycle
title YLC-assembly: large DNA assembly via yeast life cycle
title_full YLC-assembly: large DNA assembly via yeast life cycle
title_fullStr YLC-assembly: large DNA assembly via yeast life cycle
title_full_unstemmed YLC-assembly: large DNA assembly via yeast life cycle
title_short YLC-assembly: large DNA assembly via yeast life cycle
title_sort ylc-assembly: large dna assembly via yeast life cycle
topic Synthetic Biology and Bioengineering
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10450165/
https://www.ncbi.nlm.nih.gov/pubmed/37486765
http://dx.doi.org/10.1093/nar/gkad599
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