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YLC-assembly: large DNA assembly via yeast life cycle
As an enabling technique of synthetic biology, the scale of DNA assembly largely determines the scale of genetic manipulation. However, large DNA assembly technologies are generally cumbersome and inefficient. Here, we developed a YLC (yeast life cycle)-assembly method that enables in vivo iterative...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10450165/ https://www.ncbi.nlm.nih.gov/pubmed/37486765 http://dx.doi.org/10.1093/nar/gkad599 |
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author | He, Bo Ma, Yuan Tian, Fangfang Zhao, Guang-Rong Wu, Yi Yuan, Ying-Jin |
author_facet | He, Bo Ma, Yuan Tian, Fangfang Zhao, Guang-Rong Wu, Yi Yuan, Ying-Jin |
author_sort | He, Bo |
collection | PubMed |
description | As an enabling technique of synthetic biology, the scale of DNA assembly largely determines the scale of genetic manipulation. However, large DNA assembly technologies are generally cumbersome and inefficient. Here, we developed a YLC (yeast life cycle)-assembly method that enables in vivo iterative assembly of large DNA by nesting cell-cell transfer of assembled DNA in the cycle of yeast mating and sporulation. Using this method, we successfully assembled a hundred-kilobase (kb)-sized endogenous yeast DNA and a megabase (Mb)-sized exogenous DNA. For each round, over 10(4) positive colonies per 10(7) cells could be obtained, with an accuracy ranging from 67% to 100%. Compared with other Mb-sized DNA assembly methods, this method exhibits a higher success rate with an easy-to-operate workflow that avoid in vitro operations of large DNA. YLC-assembly lowers the technical difficulty of Mb-sized DNA assembly and could be a valuable tool for large-scale genome engineering and synthetic genomics. |
format | Online Article Text |
id | pubmed-10450165 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-104501652023-08-26 YLC-assembly: large DNA assembly via yeast life cycle He, Bo Ma, Yuan Tian, Fangfang Zhao, Guang-Rong Wu, Yi Yuan, Ying-Jin Nucleic Acids Res Synthetic Biology and Bioengineering As an enabling technique of synthetic biology, the scale of DNA assembly largely determines the scale of genetic manipulation. However, large DNA assembly technologies are generally cumbersome and inefficient. Here, we developed a YLC (yeast life cycle)-assembly method that enables in vivo iterative assembly of large DNA by nesting cell-cell transfer of assembled DNA in the cycle of yeast mating and sporulation. Using this method, we successfully assembled a hundred-kilobase (kb)-sized endogenous yeast DNA and a megabase (Mb)-sized exogenous DNA. For each round, over 10(4) positive colonies per 10(7) cells could be obtained, with an accuracy ranging from 67% to 100%. Compared with other Mb-sized DNA assembly methods, this method exhibits a higher success rate with an easy-to-operate workflow that avoid in vitro operations of large DNA. YLC-assembly lowers the technical difficulty of Mb-sized DNA assembly and could be a valuable tool for large-scale genome engineering and synthetic genomics. Oxford University Press 2023-07-24 /pmc/articles/PMC10450165/ /pubmed/37486765 http://dx.doi.org/10.1093/nar/gkad599 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Synthetic Biology and Bioengineering He, Bo Ma, Yuan Tian, Fangfang Zhao, Guang-Rong Wu, Yi Yuan, Ying-Jin YLC-assembly: large DNA assembly via yeast life cycle |
title | YLC-assembly: large DNA assembly via yeast life cycle |
title_full | YLC-assembly: large DNA assembly via yeast life cycle |
title_fullStr | YLC-assembly: large DNA assembly via yeast life cycle |
title_full_unstemmed | YLC-assembly: large DNA assembly via yeast life cycle |
title_short | YLC-assembly: large DNA assembly via yeast life cycle |
title_sort | ylc-assembly: large dna assembly via yeast life cycle |
topic | Synthetic Biology and Bioengineering |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10450165/ https://www.ncbi.nlm.nih.gov/pubmed/37486765 http://dx.doi.org/10.1093/nar/gkad599 |
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