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CSF-Glioma: A Causal Segmentation Framework for Accurate Grading and Subregion Identification of Gliomas

Deep networks have shown strong performance in glioma grading; however, interpreting their decisions remains challenging due to glioma heterogeneity. To address these challenges, the proposed solution is the Causal Segmentation Framework (CSF). This framework aims to accurately predict high- and low...

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Autores principales: Zheng, Yao, Huang, Dong, Feng, Yuefei, Hao, Xiaoshuo, He, Yutao, Liu, Yang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10451284/
https://www.ncbi.nlm.nih.gov/pubmed/37627772
http://dx.doi.org/10.3390/bioengineering10080887
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author Zheng, Yao
Huang, Dong
Feng, Yuefei
Hao, Xiaoshuo
He, Yutao
Liu, Yang
author_facet Zheng, Yao
Huang, Dong
Feng, Yuefei
Hao, Xiaoshuo
He, Yutao
Liu, Yang
author_sort Zheng, Yao
collection PubMed
description Deep networks have shown strong performance in glioma grading; however, interpreting their decisions remains challenging due to glioma heterogeneity. To address these challenges, the proposed solution is the Causal Segmentation Framework (CSF). This framework aims to accurately predict high- and low-grade gliomas while simultaneously highlighting key subregions. Our framework utilizes a shrinkage segmentation method to identify subregions containing essential decision information. Moreover, we introduce a glioma grading module that combines deep learning and traditional approaches for precise grading. Our proposed model achieves the best performance among all models, with an AUC of 96.14%, an F1 score of 93.74%, an accuracy of 91.04%, a sensitivity of 91.83%, and a specificity of 88.88%. Additionally, our model exhibits efficient resource utilization, completing predictions within 2.31s and occupying only 0.12 GB of memory during the test phase. Furthermore, our approach provides clear and specific visualizations of key subregions, surpassing other methods in terms of interpretability. In conclusion, the Causal Segmentation Framework (CSF) demonstrates its effectiveness at accurately predicting glioma grades and identifying key subregions. The inclusion of causality in the CSF model enhances the reliability and accuracy of preoperative decision-making for gliomas. The interpretable results provided by the CSF model can assist clinicians in their assessment and treatment planning.
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spelling pubmed-104512842023-08-26 CSF-Glioma: A Causal Segmentation Framework for Accurate Grading and Subregion Identification of Gliomas Zheng, Yao Huang, Dong Feng, Yuefei Hao, Xiaoshuo He, Yutao Liu, Yang Bioengineering (Basel) Article Deep networks have shown strong performance in glioma grading; however, interpreting their decisions remains challenging due to glioma heterogeneity. To address these challenges, the proposed solution is the Causal Segmentation Framework (CSF). This framework aims to accurately predict high- and low-grade gliomas while simultaneously highlighting key subregions. Our framework utilizes a shrinkage segmentation method to identify subregions containing essential decision information. Moreover, we introduce a glioma grading module that combines deep learning and traditional approaches for precise grading. Our proposed model achieves the best performance among all models, with an AUC of 96.14%, an F1 score of 93.74%, an accuracy of 91.04%, a sensitivity of 91.83%, and a specificity of 88.88%. Additionally, our model exhibits efficient resource utilization, completing predictions within 2.31s and occupying only 0.12 GB of memory during the test phase. Furthermore, our approach provides clear and specific visualizations of key subregions, surpassing other methods in terms of interpretability. In conclusion, the Causal Segmentation Framework (CSF) demonstrates its effectiveness at accurately predicting glioma grades and identifying key subregions. The inclusion of causality in the CSF model enhances the reliability and accuracy of preoperative decision-making for gliomas. The interpretable results provided by the CSF model can assist clinicians in their assessment and treatment planning. MDPI 2023-07-26 /pmc/articles/PMC10451284/ /pubmed/37627772 http://dx.doi.org/10.3390/bioengineering10080887 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zheng, Yao
Huang, Dong
Feng, Yuefei
Hao, Xiaoshuo
He, Yutao
Liu, Yang
CSF-Glioma: A Causal Segmentation Framework for Accurate Grading and Subregion Identification of Gliomas
title CSF-Glioma: A Causal Segmentation Framework for Accurate Grading and Subregion Identification of Gliomas
title_full CSF-Glioma: A Causal Segmentation Framework for Accurate Grading and Subregion Identification of Gliomas
title_fullStr CSF-Glioma: A Causal Segmentation Framework for Accurate Grading and Subregion Identification of Gliomas
title_full_unstemmed CSF-Glioma: A Causal Segmentation Framework for Accurate Grading and Subregion Identification of Gliomas
title_short CSF-Glioma: A Causal Segmentation Framework for Accurate Grading and Subregion Identification of Gliomas
title_sort csf-glioma: a causal segmentation framework for accurate grading and subregion identification of gliomas
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10451284/
https://www.ncbi.nlm.nih.gov/pubmed/37627772
http://dx.doi.org/10.3390/bioengineering10080887
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