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Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment

Introduction: Biogenic amines play important roles throughout cellular metabolism. This study explores a role of biogenic amines in glioblastoma pathogenesis. Here, we characterize the plasma levels of biogenic amines in glioblastoma patients undergoing standard-of-care treatment. Methods: We examin...

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Autores principales: Aboud, Orwa, Liu, Yin, Dahabiyeh, Lina, Abuaisheh, Ahmad, Li, Fangzhou, Aboubechara, John Paul, Riess, Jonathan, Bloch, Orin, Hodeify, Rawad, Tagkopoulos, Ilias, Fiehn, Oliver
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10452138/
https://www.ncbi.nlm.nih.gov/pubmed/37626757
http://dx.doi.org/10.3390/biomedicines11082261
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author Aboud, Orwa
Liu, Yin
Dahabiyeh, Lina
Abuaisheh, Ahmad
Li, Fangzhou
Aboubechara, John Paul
Riess, Jonathan
Bloch, Orin
Hodeify, Rawad
Tagkopoulos, Ilias
Fiehn, Oliver
author_facet Aboud, Orwa
Liu, Yin
Dahabiyeh, Lina
Abuaisheh, Ahmad
Li, Fangzhou
Aboubechara, John Paul
Riess, Jonathan
Bloch, Orin
Hodeify, Rawad
Tagkopoulos, Ilias
Fiehn, Oliver
author_sort Aboud, Orwa
collection PubMed
description Introduction: Biogenic amines play important roles throughout cellular metabolism. This study explores a role of biogenic amines in glioblastoma pathogenesis. Here, we characterize the plasma levels of biogenic amines in glioblastoma patients undergoing standard-of-care treatment. Methods: We examined 138 plasma samples from 36 patients with isocitrate dehydrogenase (IDH) wild-type glioblastoma at multiple stages of treatment. Untargeted gas chromatography–time of flight mass spectrometry (GC-TOF MS) was used to measure metabolite levels. Machine learning approaches were then used to develop a predictive tool based on these datasets. Results: Surgery was associated with increased levels of 12 metabolites and decreased levels of 11 metabolites. Chemoradiation was associated with increased levels of three metabolites and decreased levels of three other metabolites. Ensemble learning models, specifically random forest (RF) and AdaBoost (AB), accurately classified treatment phases with high accuracy (RF: 0.81 ± 0.04, AB: 0.78 ± 0.05). The metabolites sorbitol and N-methylisoleucine were identified as important predictive features and confirmed via SHAP. Conclusion: To our knowledge, this is the first study to describe plasma biogenic amine signatures throughout the treatment of patients with glioblastoma. A larger study is needed to confirm these results with hopes of developing a diagnostic algorithm.
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spelling pubmed-104521382023-08-26 Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment Aboud, Orwa Liu, Yin Dahabiyeh, Lina Abuaisheh, Ahmad Li, Fangzhou Aboubechara, John Paul Riess, Jonathan Bloch, Orin Hodeify, Rawad Tagkopoulos, Ilias Fiehn, Oliver Biomedicines Article Introduction: Biogenic amines play important roles throughout cellular metabolism. This study explores a role of biogenic amines in glioblastoma pathogenesis. Here, we characterize the plasma levels of biogenic amines in glioblastoma patients undergoing standard-of-care treatment. Methods: We examined 138 plasma samples from 36 patients with isocitrate dehydrogenase (IDH) wild-type glioblastoma at multiple stages of treatment. Untargeted gas chromatography–time of flight mass spectrometry (GC-TOF MS) was used to measure metabolite levels. Machine learning approaches were then used to develop a predictive tool based on these datasets. Results: Surgery was associated with increased levels of 12 metabolites and decreased levels of 11 metabolites. Chemoradiation was associated with increased levels of three metabolites and decreased levels of three other metabolites. Ensemble learning models, specifically random forest (RF) and AdaBoost (AB), accurately classified treatment phases with high accuracy (RF: 0.81 ± 0.04, AB: 0.78 ± 0.05). The metabolites sorbitol and N-methylisoleucine were identified as important predictive features and confirmed via SHAP. Conclusion: To our knowledge, this is the first study to describe plasma biogenic amine signatures throughout the treatment of patients with glioblastoma. A larger study is needed to confirm these results with hopes of developing a diagnostic algorithm. MDPI 2023-08-13 /pmc/articles/PMC10452138/ /pubmed/37626757 http://dx.doi.org/10.3390/biomedicines11082261 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Aboud, Orwa
Liu, Yin
Dahabiyeh, Lina
Abuaisheh, Ahmad
Li, Fangzhou
Aboubechara, John Paul
Riess, Jonathan
Bloch, Orin
Hodeify, Rawad
Tagkopoulos, Ilias
Fiehn, Oliver
Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment
title Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment
title_full Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment
title_fullStr Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment
title_full_unstemmed Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment
title_short Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment
title_sort profile characterization of biogenic amines in glioblastoma patients undergoing standard-of-care treatment
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10452138/
https://www.ncbi.nlm.nih.gov/pubmed/37626757
http://dx.doi.org/10.3390/biomedicines11082261
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