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Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment
Introduction: Biogenic amines play important roles throughout cellular metabolism. This study explores a role of biogenic amines in glioblastoma pathogenesis. Here, we characterize the plasma levels of biogenic amines in glioblastoma patients undergoing standard-of-care treatment. Methods: We examin...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10452138/ https://www.ncbi.nlm.nih.gov/pubmed/37626757 http://dx.doi.org/10.3390/biomedicines11082261 |
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author | Aboud, Orwa Liu, Yin Dahabiyeh, Lina Abuaisheh, Ahmad Li, Fangzhou Aboubechara, John Paul Riess, Jonathan Bloch, Orin Hodeify, Rawad Tagkopoulos, Ilias Fiehn, Oliver |
author_facet | Aboud, Orwa Liu, Yin Dahabiyeh, Lina Abuaisheh, Ahmad Li, Fangzhou Aboubechara, John Paul Riess, Jonathan Bloch, Orin Hodeify, Rawad Tagkopoulos, Ilias Fiehn, Oliver |
author_sort | Aboud, Orwa |
collection | PubMed |
description | Introduction: Biogenic amines play important roles throughout cellular metabolism. This study explores a role of biogenic amines in glioblastoma pathogenesis. Here, we characterize the plasma levels of biogenic amines in glioblastoma patients undergoing standard-of-care treatment. Methods: We examined 138 plasma samples from 36 patients with isocitrate dehydrogenase (IDH) wild-type glioblastoma at multiple stages of treatment. Untargeted gas chromatography–time of flight mass spectrometry (GC-TOF MS) was used to measure metabolite levels. Machine learning approaches were then used to develop a predictive tool based on these datasets. Results: Surgery was associated with increased levels of 12 metabolites and decreased levels of 11 metabolites. Chemoradiation was associated with increased levels of three metabolites and decreased levels of three other metabolites. Ensemble learning models, specifically random forest (RF) and AdaBoost (AB), accurately classified treatment phases with high accuracy (RF: 0.81 ± 0.04, AB: 0.78 ± 0.05). The metabolites sorbitol and N-methylisoleucine were identified as important predictive features and confirmed via SHAP. Conclusion: To our knowledge, this is the first study to describe plasma biogenic amine signatures throughout the treatment of patients with glioblastoma. A larger study is needed to confirm these results with hopes of developing a diagnostic algorithm. |
format | Online Article Text |
id | pubmed-10452138 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-104521382023-08-26 Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment Aboud, Orwa Liu, Yin Dahabiyeh, Lina Abuaisheh, Ahmad Li, Fangzhou Aboubechara, John Paul Riess, Jonathan Bloch, Orin Hodeify, Rawad Tagkopoulos, Ilias Fiehn, Oliver Biomedicines Article Introduction: Biogenic amines play important roles throughout cellular metabolism. This study explores a role of biogenic amines in glioblastoma pathogenesis. Here, we characterize the plasma levels of biogenic amines in glioblastoma patients undergoing standard-of-care treatment. Methods: We examined 138 plasma samples from 36 patients with isocitrate dehydrogenase (IDH) wild-type glioblastoma at multiple stages of treatment. Untargeted gas chromatography–time of flight mass spectrometry (GC-TOF MS) was used to measure metabolite levels. Machine learning approaches were then used to develop a predictive tool based on these datasets. Results: Surgery was associated with increased levels of 12 metabolites and decreased levels of 11 metabolites. Chemoradiation was associated with increased levels of three metabolites and decreased levels of three other metabolites. Ensemble learning models, specifically random forest (RF) and AdaBoost (AB), accurately classified treatment phases with high accuracy (RF: 0.81 ± 0.04, AB: 0.78 ± 0.05). The metabolites sorbitol and N-methylisoleucine were identified as important predictive features and confirmed via SHAP. Conclusion: To our knowledge, this is the first study to describe plasma biogenic amine signatures throughout the treatment of patients with glioblastoma. A larger study is needed to confirm these results with hopes of developing a diagnostic algorithm. MDPI 2023-08-13 /pmc/articles/PMC10452138/ /pubmed/37626757 http://dx.doi.org/10.3390/biomedicines11082261 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Aboud, Orwa Liu, Yin Dahabiyeh, Lina Abuaisheh, Ahmad Li, Fangzhou Aboubechara, John Paul Riess, Jonathan Bloch, Orin Hodeify, Rawad Tagkopoulos, Ilias Fiehn, Oliver Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment |
title | Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment |
title_full | Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment |
title_fullStr | Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment |
title_full_unstemmed | Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment |
title_short | Profile Characterization of Biogenic Amines in Glioblastoma Patients Undergoing Standard-of-Care Treatment |
title_sort | profile characterization of biogenic amines in glioblastoma patients undergoing standard-of-care treatment |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10452138/ https://www.ncbi.nlm.nih.gov/pubmed/37626757 http://dx.doi.org/10.3390/biomedicines11082261 |
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