Cargando…

Genome-Wide Analysis of TCP Transcription Factors and Their Expression Pattern Analysis of Rose Plants (Rosa chinensis)

The plant-specific transcription factor TEOSINTE BRANCHED, CYCLOIDEA, AND PROLIFERATING CELL FACTOR (TCP) gene family plays vital roles in various biological processes, including growth and development, hormone signaling, and stress responses. However, there is a limited amount of information regard...

Descripción completa

Detalles Bibliográficos
Autores principales: Zou, Qingcheng, Dong, Qing, Tian, Danqing, Mao, Lihui, Cao, Xuerui, Zhu, Kaiyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10453170/
https://www.ncbi.nlm.nih.gov/pubmed/37623220
http://dx.doi.org/10.3390/cimb45080401
_version_ 1785095865929564160
author Zou, Qingcheng
Dong, Qing
Tian, Danqing
Mao, Lihui
Cao, Xuerui
Zhu, Kaiyuan
author_facet Zou, Qingcheng
Dong, Qing
Tian, Danqing
Mao, Lihui
Cao, Xuerui
Zhu, Kaiyuan
author_sort Zou, Qingcheng
collection PubMed
description The plant-specific transcription factor TEOSINTE BRANCHED, CYCLOIDEA, AND PROLIFERATING CELL FACTOR (TCP) gene family plays vital roles in various biological processes, including growth and development, hormone signaling, and stress responses. However, there is a limited amount of information regarding the TCP gene family in roses (Rosa sp.). In this study, we identified 18 TCP genes in the rose genome, which were further classified into two subgroups (Group A and Group B) via phylogenetic analysis. Comprehensive characterization of these TCP genes was performed, including gene structure, motif composition, chromosomal location, and expression profiles. Synteny analysis revealed that a few TCP genes are involved in segmental duplication events, indicating that these genes played an important role in the expansion of the TCP gene family in roses. This suggests that segmental duplication events have caused the evolution of the TCP gene family and may have generated new functions. Our study provides an insight into the evolutionary and functional characteristics of the TCP gene family in roses and lays a foundation for the future exploration of the regulatory mechanisms of TCP genes in plant growth and development.
format Online
Article
Text
id pubmed-10453170
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-104531702023-08-26 Genome-Wide Analysis of TCP Transcription Factors and Their Expression Pattern Analysis of Rose Plants (Rosa chinensis) Zou, Qingcheng Dong, Qing Tian, Danqing Mao, Lihui Cao, Xuerui Zhu, Kaiyuan Curr Issues Mol Biol Article The plant-specific transcription factor TEOSINTE BRANCHED, CYCLOIDEA, AND PROLIFERATING CELL FACTOR (TCP) gene family plays vital roles in various biological processes, including growth and development, hormone signaling, and stress responses. However, there is a limited amount of information regarding the TCP gene family in roses (Rosa sp.). In this study, we identified 18 TCP genes in the rose genome, which were further classified into two subgroups (Group A and Group B) via phylogenetic analysis. Comprehensive characterization of these TCP genes was performed, including gene structure, motif composition, chromosomal location, and expression profiles. Synteny analysis revealed that a few TCP genes are involved in segmental duplication events, indicating that these genes played an important role in the expansion of the TCP gene family in roses. This suggests that segmental duplication events have caused the evolution of the TCP gene family and may have generated new functions. Our study provides an insight into the evolutionary and functional characteristics of the TCP gene family in roses and lays a foundation for the future exploration of the regulatory mechanisms of TCP genes in plant growth and development. MDPI 2023-07-31 /pmc/articles/PMC10453170/ /pubmed/37623220 http://dx.doi.org/10.3390/cimb45080401 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zou, Qingcheng
Dong, Qing
Tian, Danqing
Mao, Lihui
Cao, Xuerui
Zhu, Kaiyuan
Genome-Wide Analysis of TCP Transcription Factors and Their Expression Pattern Analysis of Rose Plants (Rosa chinensis)
title Genome-Wide Analysis of TCP Transcription Factors and Their Expression Pattern Analysis of Rose Plants (Rosa chinensis)
title_full Genome-Wide Analysis of TCP Transcription Factors and Their Expression Pattern Analysis of Rose Plants (Rosa chinensis)
title_fullStr Genome-Wide Analysis of TCP Transcription Factors and Their Expression Pattern Analysis of Rose Plants (Rosa chinensis)
title_full_unstemmed Genome-Wide Analysis of TCP Transcription Factors and Their Expression Pattern Analysis of Rose Plants (Rosa chinensis)
title_short Genome-Wide Analysis of TCP Transcription Factors and Their Expression Pattern Analysis of Rose Plants (Rosa chinensis)
title_sort genome-wide analysis of tcp transcription factors and their expression pattern analysis of rose plants (rosa chinensis)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10453170/
https://www.ncbi.nlm.nih.gov/pubmed/37623220
http://dx.doi.org/10.3390/cimb45080401
work_keys_str_mv AT zouqingcheng genomewideanalysisoftcptranscriptionfactorsandtheirexpressionpatternanalysisofroseplantsrosachinensis
AT dongqing genomewideanalysisoftcptranscriptionfactorsandtheirexpressionpatternanalysisofroseplantsrosachinensis
AT tiandanqing genomewideanalysisoftcptranscriptionfactorsandtheirexpressionpatternanalysisofroseplantsrosachinensis
AT maolihui genomewideanalysisoftcptranscriptionfactorsandtheirexpressionpatternanalysisofroseplantsrosachinensis
AT caoxuerui genomewideanalysisoftcptranscriptionfactorsandtheirexpressionpatternanalysisofroseplantsrosachinensis
AT zhukaiyuan genomewideanalysisoftcptranscriptionfactorsandtheirexpressionpatternanalysisofroseplantsrosachinensis