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Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation

Background: Radiomics refers to the acquisition of traces of quantitative features that are usually non-perceptible to human vision and are obtained from different imaging techniques and subsequently transformed into high-dimensional data. Diffuse midline gliomas (DMG) represent approximately 20% of...

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Autores principales: Chilaca-Rosas, Maria-Fatima, Contreras-Aguilar, Manuel-Tadeo, Garcia-Lezama, Melissa, Salazar-Calderon, David-Rafael, Vargas-Del-Angel, Raul-Gabriel, Moreno-Jimenez, Sergio, Piña-Sanchez, Patricia, Trejo-Rosales, Raul-Rogelio, Delgado-Martinez, Felipe-Alfredo, Roldan-Valadez, Ernesto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10453217/
https://www.ncbi.nlm.nih.gov/pubmed/37627927
http://dx.doi.org/10.3390/diagnostics13162669
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author Chilaca-Rosas, Maria-Fatima
Contreras-Aguilar, Manuel-Tadeo
Garcia-Lezama, Melissa
Salazar-Calderon, David-Rafael
Vargas-Del-Angel, Raul-Gabriel
Moreno-Jimenez, Sergio
Piña-Sanchez, Patricia
Trejo-Rosales, Raul-Rogelio
Delgado-Martinez, Felipe-Alfredo
Roldan-Valadez, Ernesto
author_facet Chilaca-Rosas, Maria-Fatima
Contreras-Aguilar, Manuel-Tadeo
Garcia-Lezama, Melissa
Salazar-Calderon, David-Rafael
Vargas-Del-Angel, Raul-Gabriel
Moreno-Jimenez, Sergio
Piña-Sanchez, Patricia
Trejo-Rosales, Raul-Rogelio
Delgado-Martinez, Felipe-Alfredo
Roldan-Valadez, Ernesto
author_sort Chilaca-Rosas, Maria-Fatima
collection PubMed
description Background: Radiomics refers to the acquisition of traces of quantitative features that are usually non-perceptible to human vision and are obtained from different imaging techniques and subsequently transformed into high-dimensional data. Diffuse midline gliomas (DMG) represent approximately 20% of pediatric CNS tumors, with a median survival of less than one year after diagnosis. We aimed to identify which radiomics can discriminate DMG tumor regions (viable tumor and peritumoral edema) from equivalent midline normal tissue (EMNT) in patients with the positive H3.F3K27M mutation, which is associated with a worse prognosis. Patients and methods: This was a retrospective study. From a database of 126 DMG patients (children, adolescents, and young adults), only 12 had H3.3K27M mutation and available brain magnetic resonance DICOM file. The MRI T1 post-gadolinium and T2 sequences were uploaded to LIFEx software to post-process and extract radiomic features. Statistical analysis included normal distribution tests and the Mann–Whitney U test performed using IBM SPSS(®) (Version 27.0.0.1, International Business Machines Corp., Armonk, NY, USA), considering a significant statistical p-value ≤ 0.05. Results: EMNT vs. Tumor: From the T1 sequence 10 radiomics were identified, and 14 radiomics from the T2 sequence, but only one radiomic identified viable tumors in both sequences (p < 0.05) (DISCRETIZED_Q1). Peritumoral edema vs. EMNT: From the T1 sequence, five radiomics were identified, and four radiomics from the T2 sequence. However, four radiomics could discriminate peritumoral edema in both sequences (p < 0.05) (CONVENTIONAL_Kurtosis, CONVENTIONAL_ExcessKurtosis, DISCRETIZED_Kurtosis, and DISCRETIZED_ExcessKurtosis). There were no radiomics useful for distinguishing tumor tissue from peritumoral edema in both sequences. Conclusions: Less than 5% of the radiomic characteristics identified tumor regions of medical–clinical interest in T1 and T2 sequences of conventional magnetic resonance imaging. The first-order and second-order radiomic features suggest support to investigators and clinicians for careful evaluation for diagnosis, patient classification, and multimodality cancer treatment planning.
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spelling pubmed-104532172023-08-26 Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation Chilaca-Rosas, Maria-Fatima Contreras-Aguilar, Manuel-Tadeo Garcia-Lezama, Melissa Salazar-Calderon, David-Rafael Vargas-Del-Angel, Raul-Gabriel Moreno-Jimenez, Sergio Piña-Sanchez, Patricia Trejo-Rosales, Raul-Rogelio Delgado-Martinez, Felipe-Alfredo Roldan-Valadez, Ernesto Diagnostics (Basel) Article Background: Radiomics refers to the acquisition of traces of quantitative features that are usually non-perceptible to human vision and are obtained from different imaging techniques and subsequently transformed into high-dimensional data. Diffuse midline gliomas (DMG) represent approximately 20% of pediatric CNS tumors, with a median survival of less than one year after diagnosis. We aimed to identify which radiomics can discriminate DMG tumor regions (viable tumor and peritumoral edema) from equivalent midline normal tissue (EMNT) in patients with the positive H3.F3K27M mutation, which is associated with a worse prognosis. Patients and methods: This was a retrospective study. From a database of 126 DMG patients (children, adolescents, and young adults), only 12 had H3.3K27M mutation and available brain magnetic resonance DICOM file. The MRI T1 post-gadolinium and T2 sequences were uploaded to LIFEx software to post-process and extract radiomic features. Statistical analysis included normal distribution tests and the Mann–Whitney U test performed using IBM SPSS(®) (Version 27.0.0.1, International Business Machines Corp., Armonk, NY, USA), considering a significant statistical p-value ≤ 0.05. Results: EMNT vs. Tumor: From the T1 sequence 10 radiomics were identified, and 14 radiomics from the T2 sequence, but only one radiomic identified viable tumors in both sequences (p < 0.05) (DISCRETIZED_Q1). Peritumoral edema vs. EMNT: From the T1 sequence, five radiomics were identified, and four radiomics from the T2 sequence. However, four radiomics could discriminate peritumoral edema in both sequences (p < 0.05) (CONVENTIONAL_Kurtosis, CONVENTIONAL_ExcessKurtosis, DISCRETIZED_Kurtosis, and DISCRETIZED_ExcessKurtosis). There were no radiomics useful for distinguishing tumor tissue from peritumoral edema in both sequences. Conclusions: Less than 5% of the radiomic characteristics identified tumor regions of medical–clinical interest in T1 and T2 sequences of conventional magnetic resonance imaging. The first-order and second-order radiomic features suggest support to investigators and clinicians for careful evaluation for diagnosis, patient classification, and multimodality cancer treatment planning. MDPI 2023-08-14 /pmc/articles/PMC10453217/ /pubmed/37627927 http://dx.doi.org/10.3390/diagnostics13162669 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chilaca-Rosas, Maria-Fatima
Contreras-Aguilar, Manuel-Tadeo
Garcia-Lezama, Melissa
Salazar-Calderon, David-Rafael
Vargas-Del-Angel, Raul-Gabriel
Moreno-Jimenez, Sergio
Piña-Sanchez, Patricia
Trejo-Rosales, Raul-Rogelio
Delgado-Martinez, Felipe-Alfredo
Roldan-Valadez, Ernesto
Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation
title Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation
title_full Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation
title_fullStr Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation
title_full_unstemmed Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation
title_short Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation
title_sort identification of radiomic signatures in brain mri sequences t1 and t2 that differentiate tumor regions of midline gliomas with h3.3k27m mutation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10453217/
https://www.ncbi.nlm.nih.gov/pubmed/37627927
http://dx.doi.org/10.3390/diagnostics13162669
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