Cargando…
Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation
Background: Radiomics refers to the acquisition of traces of quantitative features that are usually non-perceptible to human vision and are obtained from different imaging techniques and subsequently transformed into high-dimensional data. Diffuse midline gliomas (DMG) represent approximately 20% of...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10453217/ https://www.ncbi.nlm.nih.gov/pubmed/37627927 http://dx.doi.org/10.3390/diagnostics13162669 |
_version_ | 1785095878045859840 |
---|---|
author | Chilaca-Rosas, Maria-Fatima Contreras-Aguilar, Manuel-Tadeo Garcia-Lezama, Melissa Salazar-Calderon, David-Rafael Vargas-Del-Angel, Raul-Gabriel Moreno-Jimenez, Sergio Piña-Sanchez, Patricia Trejo-Rosales, Raul-Rogelio Delgado-Martinez, Felipe-Alfredo Roldan-Valadez, Ernesto |
author_facet | Chilaca-Rosas, Maria-Fatima Contreras-Aguilar, Manuel-Tadeo Garcia-Lezama, Melissa Salazar-Calderon, David-Rafael Vargas-Del-Angel, Raul-Gabriel Moreno-Jimenez, Sergio Piña-Sanchez, Patricia Trejo-Rosales, Raul-Rogelio Delgado-Martinez, Felipe-Alfredo Roldan-Valadez, Ernesto |
author_sort | Chilaca-Rosas, Maria-Fatima |
collection | PubMed |
description | Background: Radiomics refers to the acquisition of traces of quantitative features that are usually non-perceptible to human vision and are obtained from different imaging techniques and subsequently transformed into high-dimensional data. Diffuse midline gliomas (DMG) represent approximately 20% of pediatric CNS tumors, with a median survival of less than one year after diagnosis. We aimed to identify which radiomics can discriminate DMG tumor regions (viable tumor and peritumoral edema) from equivalent midline normal tissue (EMNT) in patients with the positive H3.F3K27M mutation, which is associated with a worse prognosis. Patients and methods: This was a retrospective study. From a database of 126 DMG patients (children, adolescents, and young adults), only 12 had H3.3K27M mutation and available brain magnetic resonance DICOM file. The MRI T1 post-gadolinium and T2 sequences were uploaded to LIFEx software to post-process and extract radiomic features. Statistical analysis included normal distribution tests and the Mann–Whitney U test performed using IBM SPSS(®) (Version 27.0.0.1, International Business Machines Corp., Armonk, NY, USA), considering a significant statistical p-value ≤ 0.05. Results: EMNT vs. Tumor: From the T1 sequence 10 radiomics were identified, and 14 radiomics from the T2 sequence, but only one radiomic identified viable tumors in both sequences (p < 0.05) (DISCRETIZED_Q1). Peritumoral edema vs. EMNT: From the T1 sequence, five radiomics were identified, and four radiomics from the T2 sequence. However, four radiomics could discriminate peritumoral edema in both sequences (p < 0.05) (CONVENTIONAL_Kurtosis, CONVENTIONAL_ExcessKurtosis, DISCRETIZED_Kurtosis, and DISCRETIZED_ExcessKurtosis). There were no radiomics useful for distinguishing tumor tissue from peritumoral edema in both sequences. Conclusions: Less than 5% of the radiomic characteristics identified tumor regions of medical–clinical interest in T1 and T2 sequences of conventional magnetic resonance imaging. The first-order and second-order radiomic features suggest support to investigators and clinicians for careful evaluation for diagnosis, patient classification, and multimodality cancer treatment planning. |
format | Online Article Text |
id | pubmed-10453217 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-104532172023-08-26 Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation Chilaca-Rosas, Maria-Fatima Contreras-Aguilar, Manuel-Tadeo Garcia-Lezama, Melissa Salazar-Calderon, David-Rafael Vargas-Del-Angel, Raul-Gabriel Moreno-Jimenez, Sergio Piña-Sanchez, Patricia Trejo-Rosales, Raul-Rogelio Delgado-Martinez, Felipe-Alfredo Roldan-Valadez, Ernesto Diagnostics (Basel) Article Background: Radiomics refers to the acquisition of traces of quantitative features that are usually non-perceptible to human vision and are obtained from different imaging techniques and subsequently transformed into high-dimensional data. Diffuse midline gliomas (DMG) represent approximately 20% of pediatric CNS tumors, with a median survival of less than one year after diagnosis. We aimed to identify which radiomics can discriminate DMG tumor regions (viable tumor and peritumoral edema) from equivalent midline normal tissue (EMNT) in patients with the positive H3.F3K27M mutation, which is associated with a worse prognosis. Patients and methods: This was a retrospective study. From a database of 126 DMG patients (children, adolescents, and young adults), only 12 had H3.3K27M mutation and available brain magnetic resonance DICOM file. The MRI T1 post-gadolinium and T2 sequences were uploaded to LIFEx software to post-process and extract radiomic features. Statistical analysis included normal distribution tests and the Mann–Whitney U test performed using IBM SPSS(®) (Version 27.0.0.1, International Business Machines Corp., Armonk, NY, USA), considering a significant statistical p-value ≤ 0.05. Results: EMNT vs. Tumor: From the T1 sequence 10 radiomics were identified, and 14 radiomics from the T2 sequence, but only one radiomic identified viable tumors in both sequences (p < 0.05) (DISCRETIZED_Q1). Peritumoral edema vs. EMNT: From the T1 sequence, five radiomics were identified, and four radiomics from the T2 sequence. However, four radiomics could discriminate peritumoral edema in both sequences (p < 0.05) (CONVENTIONAL_Kurtosis, CONVENTIONAL_ExcessKurtosis, DISCRETIZED_Kurtosis, and DISCRETIZED_ExcessKurtosis). There were no radiomics useful for distinguishing tumor tissue from peritumoral edema in both sequences. Conclusions: Less than 5% of the radiomic characteristics identified tumor regions of medical–clinical interest in T1 and T2 sequences of conventional magnetic resonance imaging. The first-order and second-order radiomic features suggest support to investigators and clinicians for careful evaluation for diagnosis, patient classification, and multimodality cancer treatment planning. MDPI 2023-08-14 /pmc/articles/PMC10453217/ /pubmed/37627927 http://dx.doi.org/10.3390/diagnostics13162669 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chilaca-Rosas, Maria-Fatima Contreras-Aguilar, Manuel-Tadeo Garcia-Lezama, Melissa Salazar-Calderon, David-Rafael Vargas-Del-Angel, Raul-Gabriel Moreno-Jimenez, Sergio Piña-Sanchez, Patricia Trejo-Rosales, Raul-Rogelio Delgado-Martinez, Felipe-Alfredo Roldan-Valadez, Ernesto Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation |
title | Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation |
title_full | Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation |
title_fullStr | Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation |
title_full_unstemmed | Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation |
title_short | Identification of Radiomic Signatures in Brain MRI Sequences T1 and T2 That Differentiate Tumor Regions of Midline Gliomas with H3.3K27M Mutation |
title_sort | identification of radiomic signatures in brain mri sequences t1 and t2 that differentiate tumor regions of midline gliomas with h3.3k27m mutation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10453217/ https://www.ncbi.nlm.nih.gov/pubmed/37627927 http://dx.doi.org/10.3390/diagnostics13162669 |
work_keys_str_mv | AT chilacarosasmariafatima identificationofradiomicsignaturesinbrainmrisequencest1andt2thatdifferentiatetumorregionsofmidlinegliomaswithh33k27mmutation AT contrerasaguilarmanueltadeo identificationofradiomicsignaturesinbrainmrisequencest1andt2thatdifferentiatetumorregionsofmidlinegliomaswithh33k27mmutation AT garcialezamamelissa identificationofradiomicsignaturesinbrainmrisequencest1andt2thatdifferentiatetumorregionsofmidlinegliomaswithh33k27mmutation AT salazarcalderondavidrafael identificationofradiomicsignaturesinbrainmrisequencest1andt2thatdifferentiatetumorregionsofmidlinegliomaswithh33k27mmutation AT vargasdelangelraulgabriel identificationofradiomicsignaturesinbrainmrisequencest1andt2thatdifferentiatetumorregionsofmidlinegliomaswithh33k27mmutation AT morenojimenezsergio identificationofradiomicsignaturesinbrainmrisequencest1andt2thatdifferentiatetumorregionsofmidlinegliomaswithh33k27mmutation AT pinasanchezpatricia identificationofradiomicsignaturesinbrainmrisequencest1andt2thatdifferentiatetumorregionsofmidlinegliomaswithh33k27mmutation AT trejorosalesraulrogelio identificationofradiomicsignaturesinbrainmrisequencest1andt2thatdifferentiatetumorregionsofmidlinegliomaswithh33k27mmutation AT delgadomartinezfelipealfredo identificationofradiomicsignaturesinbrainmrisequencest1andt2thatdifferentiatetumorregionsofmidlinegliomaswithh33k27mmutation AT roldanvaladezernesto identificationofradiomicsignaturesinbrainmrisequencest1andt2thatdifferentiatetumorregionsofmidlinegliomaswithh33k27mmutation |