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Energy Conversion and Entropy Production in Biased Random Walk Processes—From Discrete Modeling to the Continuous Limit

We considered discrete and continuous representations of a thermodynamic process in which a random walker (e.g., a molecular motor on a molecular track) uses periodically pumped energy (work) to pass N sites and move energetically downhill while dissipating heat. Interestingly, we found that, starti...

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Detalles Bibliográficos
Autores principales: Kirchberg, Henning, Nitzan, Abraham
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10453605/
https://www.ncbi.nlm.nih.gov/pubmed/37628248
http://dx.doi.org/10.3390/e25081218
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author Kirchberg, Henning
Nitzan, Abraham
author_facet Kirchberg, Henning
Nitzan, Abraham
author_sort Kirchberg, Henning
collection PubMed
description We considered discrete and continuous representations of a thermodynamic process in which a random walker (e.g., a molecular motor on a molecular track) uses periodically pumped energy (work) to pass N sites and move energetically downhill while dissipating heat. Interestingly, we found that, starting from a discrete model, the limit in which the motion becomes continuous in space and time ([Formula: see text]) is not unique and depends on what physical observables are assumed to be unchanged in the process. In particular, one may (as usually done) choose to keep the speed and diffusion coefficient fixed during this limiting process, in which case, the entropy production is affected. In addition, we also studied processes in which the entropy production is kept constant as [Formula: see text] at the cost of a modified speed or diffusion coefficient. Furthermore, we also combined this dynamics with work against an opposing force, which made it possible to study the effect of discretization of the process on the thermodynamic efficiency of transferring the power input to the power output. Interestingly, we found that the efficiency was increased in the limit of [Formula: see text]. Finally, we investigated the same process when transitions between sites can only happen at finite time intervals and studied the impact of this time discretization on the thermodynamic variables as the continuous limit is approached.
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spelling pubmed-104536052023-08-26 Energy Conversion and Entropy Production in Biased Random Walk Processes—From Discrete Modeling to the Continuous Limit Kirchberg, Henning Nitzan, Abraham Entropy (Basel) Article We considered discrete and continuous representations of a thermodynamic process in which a random walker (e.g., a molecular motor on a molecular track) uses periodically pumped energy (work) to pass N sites and move energetically downhill while dissipating heat. Interestingly, we found that, starting from a discrete model, the limit in which the motion becomes continuous in space and time ([Formula: see text]) is not unique and depends on what physical observables are assumed to be unchanged in the process. In particular, one may (as usually done) choose to keep the speed and diffusion coefficient fixed during this limiting process, in which case, the entropy production is affected. In addition, we also studied processes in which the entropy production is kept constant as [Formula: see text] at the cost of a modified speed or diffusion coefficient. Furthermore, we also combined this dynamics with work against an opposing force, which made it possible to study the effect of discretization of the process on the thermodynamic efficiency of transferring the power input to the power output. Interestingly, we found that the efficiency was increased in the limit of [Formula: see text]. Finally, we investigated the same process when transitions between sites can only happen at finite time intervals and studied the impact of this time discretization on the thermodynamic variables as the continuous limit is approached. MDPI 2023-08-16 /pmc/articles/PMC10453605/ /pubmed/37628248 http://dx.doi.org/10.3390/e25081218 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kirchberg, Henning
Nitzan, Abraham
Energy Conversion and Entropy Production in Biased Random Walk Processes—From Discrete Modeling to the Continuous Limit
title Energy Conversion and Entropy Production in Biased Random Walk Processes—From Discrete Modeling to the Continuous Limit
title_full Energy Conversion and Entropy Production in Biased Random Walk Processes—From Discrete Modeling to the Continuous Limit
title_fullStr Energy Conversion and Entropy Production in Biased Random Walk Processes—From Discrete Modeling to the Continuous Limit
title_full_unstemmed Energy Conversion and Entropy Production in Biased Random Walk Processes—From Discrete Modeling to the Continuous Limit
title_short Energy Conversion and Entropy Production in Biased Random Walk Processes—From Discrete Modeling to the Continuous Limit
title_sort energy conversion and entropy production in biased random walk processes—from discrete modeling to the continuous limit
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10453605/
https://www.ncbi.nlm.nih.gov/pubmed/37628248
http://dx.doi.org/10.3390/e25081218
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