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LRP5, SLC6A3, and SOX10 Expression in Conventional Ameloblastoma

Cell proliferation and invasion are characteristic of many tumors, including ameloblastoma, and are important features to target in possible future therapeutic applications. Objective: The objective of this study was the identification of key genes and inhibitory drugs related to the cell proliferat...

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Autores principales: Correa-Arzate, Lorena, Portilla-Robertson, Javier, Ramírez-Jarquín, Josué Orlando, Jacinto-Alemán, Luis Fernando, Mejía-Velázquez, Claudia Patricia, Villanueva-Sánchez, Francisco Germán, Rodríguez-Vázquez, Mariana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10453908/
https://www.ncbi.nlm.nih.gov/pubmed/37628576
http://dx.doi.org/10.3390/genes14081524
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author Correa-Arzate, Lorena
Portilla-Robertson, Javier
Ramírez-Jarquín, Josué Orlando
Jacinto-Alemán, Luis Fernando
Mejía-Velázquez, Claudia Patricia
Villanueva-Sánchez, Francisco Germán
Rodríguez-Vázquez, Mariana
author_facet Correa-Arzate, Lorena
Portilla-Robertson, Javier
Ramírez-Jarquín, Josué Orlando
Jacinto-Alemán, Luis Fernando
Mejía-Velázquez, Claudia Patricia
Villanueva-Sánchez, Francisco Germán
Rodríguez-Vázquez, Mariana
author_sort Correa-Arzate, Lorena
collection PubMed
description Cell proliferation and invasion are characteristic of many tumors, including ameloblastoma, and are important features to target in possible future therapeutic applications. Objective: The objective of this study was the identification of key genes and inhibitory drugs related to the cell proliferation and invasion of ameloblastoma using bioinformatic analysis. Methods: The H10KA_07_38 gene profile database was analyzed by Rstudio and ShinyGO Gene Ontology enrichment. String, Cytoscape-MCODE, and Kaplan–Meier plots were generated, which were subsequently validated by RT-qPCR relative expression and immunoexpression analyses. To propose specific inhibitory drugs, a bioinformatic search using Drug Gene Budger and DrugBank was performed. Results: A total of 204 significantly upregulated genes were identified. Gene ontology enrichment analysis identified four pathways related to cell proliferation and cell invasion. A total of 37 genes were involved in these pathways, and 11 genes showed an MCODE score of ≥0.4; however, only SLC6A3, SOX10, and LRP5 were negatively associated with overall survival (HR = 1.49 (p = 0.0072), HR = 1.55 (p = 0.0018), and HR = 1.38 (p = 0.025), respectively). The RT-qPCR results confirmed the significant differences in expression, with overexpression of >2 for SLC6A3 and SOX10. The immunoexpression analysis indicated positive LRP5 and SLC6A3 expression. The inhibitory drugs bioinformatically obtained for the above three genes were parthenolide and vorinostat. Conclusions: We identify LRP5, SLC6A3, and SOX10 as potentially important genes related to cell proliferation and invasion in the pathogenesis of ameloblastomas, along with both parthenolide and vorinostat as inhibitory drugs that could be further investigated for the development of novel therapeutic approaches against ameloblastoma.
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spelling pubmed-104539082023-08-26 LRP5, SLC6A3, and SOX10 Expression in Conventional Ameloblastoma Correa-Arzate, Lorena Portilla-Robertson, Javier Ramírez-Jarquín, Josué Orlando Jacinto-Alemán, Luis Fernando Mejía-Velázquez, Claudia Patricia Villanueva-Sánchez, Francisco Germán Rodríguez-Vázquez, Mariana Genes (Basel) Article Cell proliferation and invasion are characteristic of many tumors, including ameloblastoma, and are important features to target in possible future therapeutic applications. Objective: The objective of this study was the identification of key genes and inhibitory drugs related to the cell proliferation and invasion of ameloblastoma using bioinformatic analysis. Methods: The H10KA_07_38 gene profile database was analyzed by Rstudio and ShinyGO Gene Ontology enrichment. String, Cytoscape-MCODE, and Kaplan–Meier plots were generated, which were subsequently validated by RT-qPCR relative expression and immunoexpression analyses. To propose specific inhibitory drugs, a bioinformatic search using Drug Gene Budger and DrugBank was performed. Results: A total of 204 significantly upregulated genes were identified. Gene ontology enrichment analysis identified four pathways related to cell proliferation and cell invasion. A total of 37 genes were involved in these pathways, and 11 genes showed an MCODE score of ≥0.4; however, only SLC6A3, SOX10, and LRP5 were negatively associated with overall survival (HR = 1.49 (p = 0.0072), HR = 1.55 (p = 0.0018), and HR = 1.38 (p = 0.025), respectively). The RT-qPCR results confirmed the significant differences in expression, with overexpression of >2 for SLC6A3 and SOX10. The immunoexpression analysis indicated positive LRP5 and SLC6A3 expression. The inhibitory drugs bioinformatically obtained for the above three genes were parthenolide and vorinostat. Conclusions: We identify LRP5, SLC6A3, and SOX10 as potentially important genes related to cell proliferation and invasion in the pathogenesis of ameloblastomas, along with both parthenolide and vorinostat as inhibitory drugs that could be further investigated for the development of novel therapeutic approaches against ameloblastoma. MDPI 2023-07-26 /pmc/articles/PMC10453908/ /pubmed/37628576 http://dx.doi.org/10.3390/genes14081524 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Correa-Arzate, Lorena
Portilla-Robertson, Javier
Ramírez-Jarquín, Josué Orlando
Jacinto-Alemán, Luis Fernando
Mejía-Velázquez, Claudia Patricia
Villanueva-Sánchez, Francisco Germán
Rodríguez-Vázquez, Mariana
LRP5, SLC6A3, and SOX10 Expression in Conventional Ameloblastoma
title LRP5, SLC6A3, and SOX10 Expression in Conventional Ameloblastoma
title_full LRP5, SLC6A3, and SOX10 Expression in Conventional Ameloblastoma
title_fullStr LRP5, SLC6A3, and SOX10 Expression in Conventional Ameloblastoma
title_full_unstemmed LRP5, SLC6A3, and SOX10 Expression in Conventional Ameloblastoma
title_short LRP5, SLC6A3, and SOX10 Expression in Conventional Ameloblastoma
title_sort lrp5, slc6a3, and sox10 expression in conventional ameloblastoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10453908/
https://www.ncbi.nlm.nih.gov/pubmed/37628576
http://dx.doi.org/10.3390/genes14081524
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