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Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics
A high number of genome variants are associated with complex traits, mainly due to genome-wide association studies (GWAS). Using polygenic risk scores (PRSs) is a widely accepted method for calculating an individual’s complex trait prognosis using such data. Unlike monogenic traits, the practical im...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10454355/ https://www.ncbi.nlm.nih.gov/pubmed/37628681 http://dx.doi.org/10.3390/genes14081630 |
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author | Rancelis, Tautvydas Domarkiene, Ingrida Ambrozaityte, Laima Utkus, Algirdas |
author_facet | Rancelis, Tautvydas Domarkiene, Ingrida Ambrozaityte, Laima Utkus, Algirdas |
author_sort | Rancelis, Tautvydas |
collection | PubMed |
description | A high number of genome variants are associated with complex traits, mainly due to genome-wide association studies (GWAS). Using polygenic risk scores (PRSs) is a widely accepted method for calculating an individual’s complex trait prognosis using such data. Unlike monogenic traits, the practical implementation of complex traits by applying this method still falls behind. Calculating PRSs from all GWAS data has limited practical usability in behaviour traits due to statistical noise and the small effect size from a high number of genome variants involved. From a behaviour traits perspective, complex traits are explored using the concept of core genes from an omnigenic model, aiming to employ a simplified calculation version. Simplification may reduce the accuracy compared to a complete PRS encompassing all trait-associated variants. Integrating genome data with datasets from various disciplines, such as IT and psychology, could lead to better complex trait prediction. This review elucidates the significance of clear biological pathways in understanding behaviour traits. Specifically, it highlights the essential role of genes related to hormones, enzymes, and neurotransmitters as robust core genes in shaping these traits. Significant variations in core genes are prominently observed in behaviour traits such as stress response, impulsivity, and substance use. |
format | Online Article Text |
id | pubmed-10454355 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-104543552023-08-26 Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics Rancelis, Tautvydas Domarkiene, Ingrida Ambrozaityte, Laima Utkus, Algirdas Genes (Basel) Review A high number of genome variants are associated with complex traits, mainly due to genome-wide association studies (GWAS). Using polygenic risk scores (PRSs) is a widely accepted method for calculating an individual’s complex trait prognosis using such data. Unlike monogenic traits, the practical implementation of complex traits by applying this method still falls behind. Calculating PRSs from all GWAS data has limited practical usability in behaviour traits due to statistical noise and the small effect size from a high number of genome variants involved. From a behaviour traits perspective, complex traits are explored using the concept of core genes from an omnigenic model, aiming to employ a simplified calculation version. Simplification may reduce the accuracy compared to a complete PRS encompassing all trait-associated variants. Integrating genome data with datasets from various disciplines, such as IT and psychology, could lead to better complex trait prediction. This review elucidates the significance of clear biological pathways in understanding behaviour traits. Specifically, it highlights the essential role of genes related to hormones, enzymes, and neurotransmitters as robust core genes in shaping these traits. Significant variations in core genes are prominently observed in behaviour traits such as stress response, impulsivity, and substance use. MDPI 2023-08-16 /pmc/articles/PMC10454355/ /pubmed/37628681 http://dx.doi.org/10.3390/genes14081630 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Rancelis, Tautvydas Domarkiene, Ingrida Ambrozaityte, Laima Utkus, Algirdas Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics |
title | Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics |
title_full | Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics |
title_fullStr | Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics |
title_full_unstemmed | Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics |
title_short | Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics |
title_sort | implementing core genes and an omnigenic model for behaviour traits prediction in genomics |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10454355/ https://www.ncbi.nlm.nih.gov/pubmed/37628681 http://dx.doi.org/10.3390/genes14081630 |
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