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Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics

A high number of genome variants are associated with complex traits, mainly due to genome-wide association studies (GWAS). Using polygenic risk scores (PRSs) is a widely accepted method for calculating an individual’s complex trait prognosis using such data. Unlike monogenic traits, the practical im...

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Autores principales: Rancelis, Tautvydas, Domarkiene, Ingrida, Ambrozaityte, Laima, Utkus, Algirdas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10454355/
https://www.ncbi.nlm.nih.gov/pubmed/37628681
http://dx.doi.org/10.3390/genes14081630
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author Rancelis, Tautvydas
Domarkiene, Ingrida
Ambrozaityte, Laima
Utkus, Algirdas
author_facet Rancelis, Tautvydas
Domarkiene, Ingrida
Ambrozaityte, Laima
Utkus, Algirdas
author_sort Rancelis, Tautvydas
collection PubMed
description A high number of genome variants are associated with complex traits, mainly due to genome-wide association studies (GWAS). Using polygenic risk scores (PRSs) is a widely accepted method for calculating an individual’s complex trait prognosis using such data. Unlike monogenic traits, the practical implementation of complex traits by applying this method still falls behind. Calculating PRSs from all GWAS data has limited practical usability in behaviour traits due to statistical noise and the small effect size from a high number of genome variants involved. From a behaviour traits perspective, complex traits are explored using the concept of core genes from an omnigenic model, aiming to employ a simplified calculation version. Simplification may reduce the accuracy compared to a complete PRS encompassing all trait-associated variants. Integrating genome data with datasets from various disciplines, such as IT and psychology, could lead to better complex trait prediction. This review elucidates the significance of clear biological pathways in understanding behaviour traits. Specifically, it highlights the essential role of genes related to hormones, enzymes, and neurotransmitters as robust core genes in shaping these traits. Significant variations in core genes are prominently observed in behaviour traits such as stress response, impulsivity, and substance use.
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spelling pubmed-104543552023-08-26 Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics Rancelis, Tautvydas Domarkiene, Ingrida Ambrozaityte, Laima Utkus, Algirdas Genes (Basel) Review A high number of genome variants are associated with complex traits, mainly due to genome-wide association studies (GWAS). Using polygenic risk scores (PRSs) is a widely accepted method for calculating an individual’s complex trait prognosis using such data. Unlike monogenic traits, the practical implementation of complex traits by applying this method still falls behind. Calculating PRSs from all GWAS data has limited practical usability in behaviour traits due to statistical noise and the small effect size from a high number of genome variants involved. From a behaviour traits perspective, complex traits are explored using the concept of core genes from an omnigenic model, aiming to employ a simplified calculation version. Simplification may reduce the accuracy compared to a complete PRS encompassing all trait-associated variants. Integrating genome data with datasets from various disciplines, such as IT and psychology, could lead to better complex trait prediction. This review elucidates the significance of clear biological pathways in understanding behaviour traits. Specifically, it highlights the essential role of genes related to hormones, enzymes, and neurotransmitters as robust core genes in shaping these traits. Significant variations in core genes are prominently observed in behaviour traits such as stress response, impulsivity, and substance use. MDPI 2023-08-16 /pmc/articles/PMC10454355/ /pubmed/37628681 http://dx.doi.org/10.3390/genes14081630 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Rancelis, Tautvydas
Domarkiene, Ingrida
Ambrozaityte, Laima
Utkus, Algirdas
Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics
title Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics
title_full Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics
title_fullStr Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics
title_full_unstemmed Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics
title_short Implementing Core Genes and an Omnigenic Model for Behaviour Traits Prediction in Genomics
title_sort implementing core genes and an omnigenic model for behaviour traits prediction in genomics
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10454355/
https://www.ncbi.nlm.nih.gov/pubmed/37628681
http://dx.doi.org/10.3390/genes14081630
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