Cargando…
Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset
Accurate detection of respiratory system damage including COVID-19 is considered one of the crucial applications of deep learning (DL) models using CT images. However, the main shortcoming of the published works has been unreliable reported accuracy and the lack of repeatability with new datasets, m...
Autores principales: | , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10455108/ https://www.ncbi.nlm.nih.gov/pubmed/37623691 http://dx.doi.org/10.3390/jimaging9080159 |
_version_ | 1785096368010821632 |
---|---|
author | Parsarad, Shiva Saeedizadeh, Narges Soufi, Ghazaleh Jamalipour Shafieyoon, Shamim Hekmatnia, Farzaneh Zarei, Andrew Parviz Soleimany, Samira Yousefi, Amir Nazari, Hengameh Torabi, Pegah S. Milani, Abbas Madani Tonekaboni, Seyed Ali Rabbani, Hossein Hekmatnia, Ali Kafieh, Rahele |
author_facet | Parsarad, Shiva Saeedizadeh, Narges Soufi, Ghazaleh Jamalipour Shafieyoon, Shamim Hekmatnia, Farzaneh Zarei, Andrew Parviz Soleimany, Samira Yousefi, Amir Nazari, Hengameh Torabi, Pegah S. Milani, Abbas Madani Tonekaboni, Seyed Ali Rabbani, Hossein Hekmatnia, Ali Kafieh, Rahele |
author_sort | Parsarad, Shiva |
collection | PubMed |
description | Accurate detection of respiratory system damage including COVID-19 is considered one of the crucial applications of deep learning (DL) models using CT images. However, the main shortcoming of the published works has been unreliable reported accuracy and the lack of repeatability with new datasets, mainly due to slice-wise splits of the data, creating dependency between training and test sets due to shared data across the sets. We introduce a new dataset of CT images (ISFCT Dataset) with labels indicating the subject-wise split to train and test our DL algorithms in an unbiased manner. We also use this dataset to validate the real performance of the published works in a subject-wise data split. Another key feature provides more specific labels (eight characteristic lung features) rather than being limited to COVID-19 and healthy labels. We show that the reported high accuracy of the existing models on current slice-wise splits is not repeatable for subject-wise splits, and distribution differences between data splits are demonstrated using t-distribution stochastic neighbor embedding. We indicate that, by examining subject-wise data splitting, less complicated models show competitive results compared to the exiting complicated models, demonstrating that complex models do not necessarily generate accurate and repeatable results. |
format | Online Article Text |
id | pubmed-10455108 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-104551082023-08-26 Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset Parsarad, Shiva Saeedizadeh, Narges Soufi, Ghazaleh Jamalipour Shafieyoon, Shamim Hekmatnia, Farzaneh Zarei, Andrew Parviz Soleimany, Samira Yousefi, Amir Nazari, Hengameh Torabi, Pegah S. Milani, Abbas Madani Tonekaboni, Seyed Ali Rabbani, Hossein Hekmatnia, Ali Kafieh, Rahele J Imaging Article Accurate detection of respiratory system damage including COVID-19 is considered one of the crucial applications of deep learning (DL) models using CT images. However, the main shortcoming of the published works has been unreliable reported accuracy and the lack of repeatability with new datasets, mainly due to slice-wise splits of the data, creating dependency between training and test sets due to shared data across the sets. We introduce a new dataset of CT images (ISFCT Dataset) with labels indicating the subject-wise split to train and test our DL algorithms in an unbiased manner. We also use this dataset to validate the real performance of the published works in a subject-wise data split. Another key feature provides more specific labels (eight characteristic lung features) rather than being limited to COVID-19 and healthy labels. We show that the reported high accuracy of the existing models on current slice-wise splits is not repeatable for subject-wise splits, and distribution differences between data splits are demonstrated using t-distribution stochastic neighbor embedding. We indicate that, by examining subject-wise data splitting, less complicated models show competitive results compared to the exiting complicated models, demonstrating that complex models do not necessarily generate accurate and repeatable results. MDPI 2023-08-08 /pmc/articles/PMC10455108/ /pubmed/37623691 http://dx.doi.org/10.3390/jimaging9080159 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Parsarad, Shiva Saeedizadeh, Narges Soufi, Ghazaleh Jamalipour Shafieyoon, Shamim Hekmatnia, Farzaneh Zarei, Andrew Parviz Soleimany, Samira Yousefi, Amir Nazari, Hengameh Torabi, Pegah S. Milani, Abbas Madani Tonekaboni, Seyed Ali Rabbani, Hossein Hekmatnia, Ali Kafieh, Rahele Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset |
title | Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset |
title_full | Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset |
title_fullStr | Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset |
title_full_unstemmed | Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset |
title_short | Biased Deep Learning Methods in Detection of COVID-19 Using CT Images: A Challenge Mounted by Subject-Wise-Split ISFCT Dataset |
title_sort | biased deep learning methods in detection of covid-19 using ct images: a challenge mounted by subject-wise-split isfct dataset |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10455108/ https://www.ncbi.nlm.nih.gov/pubmed/37623691 http://dx.doi.org/10.3390/jimaging9080159 |
work_keys_str_mv | AT parsaradshiva biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT saeedizadehnarges biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT soufighazalehjamalipour biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT shafieyoonshamim biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT hekmatniafarzaneh biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT zareiandrewparviz biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT soleimanysamira biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT yousefiamir biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT nazarihengameh biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT torabipegah biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT smilaniabbas biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT madanitonekaboniseyedali biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT rabbanihossein biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT hekmatniaali biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset AT kafiehrahele biaseddeeplearningmethodsindetectionofcovid19usingctimagesachallengemountedbysubjectwisesplitisfctdataset |