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Development of anoikis-related long non-coding RNA signature associated with prognosis and immune landscape in cutaneous melanoma patients

Background: Anoikis is involved in many critical biological processes in tumors; however, function in CM is still unknown. In this study, the relevance between Anoikis-related lncRNAs (ARLs) and the clinicopathological characteristics of patients with CM was comprehensively assessed. Methods: Throug...

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Autores principales: Zhong, Like, Qian, Wenkang, Gong, Wangang, Zhu, Li, Zhu, Junfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10457054/
https://www.ncbi.nlm.nih.gov/pubmed/37543428
http://dx.doi.org/10.18632/aging.204932
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author Zhong, Like
Qian, Wenkang
Gong, Wangang
Zhu, Li
Zhu, Junfeng
author_facet Zhong, Like
Qian, Wenkang
Gong, Wangang
Zhu, Li
Zhu, Junfeng
author_sort Zhong, Like
collection PubMed
description Background: Anoikis is involved in many critical biological processes in tumors; however, function in CM is still unknown. In this study, the relevance between Anoikis-related lncRNAs (ARLs) and the clinicopathological characteristics of patients with CM was comprehensively assessed. Methods: Through analysis of TCGA dataset, ARLs were identified by using TCGA dataset. Based on the ARLs, a risk model was established to anticipate the prognosis of patients with CM, besides, the prediction accuracy of the model was evaluated. The immune infiltration landscape of patients with CM was assessed comprehensively, and the correlation between ARLs and immunity was elucidated. Immunotherapy and drug sensitivity analyses were applied to analyze the treatment response in patients with CM with diverse risk scores. Different subgroups were distinguished among the patients using consensus cluster analysis. Results: A risk model based on six ARLs was set up to obtain an accurate prediction of the prognosis of patients with CM. There were distinctions in the immune landscape among CM patients with diverse risk scores and subgroups. Six prognosis-related ARLs were highly correlated with the number of immune cells. Patients with CM with different risk scores have various sensitivities to immunotherapy and antitumor drug treatments. Conclusion: Our newly risk model associated with ARLs has considerable prognostic value for patients with CM. Not only has the risk model high prediction accuracy but it also indicates the immune status of CM patients, which will provide a new direction for the individualized therapy of patients with CM.
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spelling pubmed-104570542023-08-26 Development of anoikis-related long non-coding RNA signature associated with prognosis and immune landscape in cutaneous melanoma patients Zhong, Like Qian, Wenkang Gong, Wangang Zhu, Li Zhu, Junfeng Aging (Albany NY) Research Paper Background: Anoikis is involved in many critical biological processes in tumors; however, function in CM is still unknown. In this study, the relevance between Anoikis-related lncRNAs (ARLs) and the clinicopathological characteristics of patients with CM was comprehensively assessed. Methods: Through analysis of TCGA dataset, ARLs were identified by using TCGA dataset. Based on the ARLs, a risk model was established to anticipate the prognosis of patients with CM, besides, the prediction accuracy of the model was evaluated. The immune infiltration landscape of patients with CM was assessed comprehensively, and the correlation between ARLs and immunity was elucidated. Immunotherapy and drug sensitivity analyses were applied to analyze the treatment response in patients with CM with diverse risk scores. Different subgroups were distinguished among the patients using consensus cluster analysis. Results: A risk model based on six ARLs was set up to obtain an accurate prediction of the prognosis of patients with CM. There were distinctions in the immune landscape among CM patients with diverse risk scores and subgroups. Six prognosis-related ARLs were highly correlated with the number of immune cells. Patients with CM with different risk scores have various sensitivities to immunotherapy and antitumor drug treatments. Conclusion: Our newly risk model associated with ARLs has considerable prognostic value for patients with CM. Not only has the risk model high prediction accuracy but it also indicates the immune status of CM patients, which will provide a new direction for the individualized therapy of patients with CM. Impact Journals 2023-08-04 /pmc/articles/PMC10457054/ /pubmed/37543428 http://dx.doi.org/10.18632/aging.204932 Text en Copyright: © 2023 Zhong et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Zhong, Like
Qian, Wenkang
Gong, Wangang
Zhu, Li
Zhu, Junfeng
Development of anoikis-related long non-coding RNA signature associated with prognosis and immune landscape in cutaneous melanoma patients
title Development of anoikis-related long non-coding RNA signature associated with prognosis and immune landscape in cutaneous melanoma patients
title_full Development of anoikis-related long non-coding RNA signature associated with prognosis and immune landscape in cutaneous melanoma patients
title_fullStr Development of anoikis-related long non-coding RNA signature associated with prognosis and immune landscape in cutaneous melanoma patients
title_full_unstemmed Development of anoikis-related long non-coding RNA signature associated with prognosis and immune landscape in cutaneous melanoma patients
title_short Development of anoikis-related long non-coding RNA signature associated with prognosis and immune landscape in cutaneous melanoma patients
title_sort development of anoikis-related long non-coding rna signature associated with prognosis and immune landscape in cutaneous melanoma patients
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10457054/
https://www.ncbi.nlm.nih.gov/pubmed/37543428
http://dx.doi.org/10.18632/aging.204932
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