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The anoikis-related gene signature predicts survival accurately in colon adenocarcinoma

Colon adenocarcinoma (COAD) is a serious public health problem, the third most common cancer and the second most deadly cancer in the world. About 9.4% of cancer-related deaths in 2020 were due to COAD. Anoikis is a specialized form of programmed cell death that plays an important role in tumor inva...

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Autores principales: Hu, Gunchu, Li, Jian, Zeng, Yi, Liu, Lixin, Yu, Zhuowen, Qi, Xiaoyan, Liu, Kuijie, Yao, Hongliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10457303/
https://www.ncbi.nlm.nih.gov/pubmed/37626132
http://dx.doi.org/10.1038/s41598-023-40907-x
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author Hu, Gunchu
Li, Jian
Zeng, Yi
Liu, Lixin
Yu, Zhuowen
Qi, Xiaoyan
Liu, Kuijie
Yao, Hongliang
author_facet Hu, Gunchu
Li, Jian
Zeng, Yi
Liu, Lixin
Yu, Zhuowen
Qi, Xiaoyan
Liu, Kuijie
Yao, Hongliang
author_sort Hu, Gunchu
collection PubMed
description Colon adenocarcinoma (COAD) is a serious public health problem, the third most common cancer and the second most deadly cancer in the world. About 9.4% of cancer-related deaths in 2020 were due to COAD. Anoikis is a specialized form of programmed cell death that plays an important role in tumor invasion and metastasis. The presence of anti-anoikis factors is associated with tumor aggressiveness and drug resistance. Various bioinformatic methods, such as differential expression analysis, and functional annotation analysis, machine learning, were used in this study. RNA-sequencing and clinical data from COAD patients were obtained from the Gene expression omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases. Construction of a prognostic nomogram for predicting overall survival (OS) using multivariate analysis and Lasso-Cox regression. Immunohistochemistry (IHC) was our method of validating the expression of seven genes that are linked to anoikis in COAD. We identified seven anoikis-related genes as predictors of COAD survival and prognosis, and confirmed their accuracy in predicting colon adenocarcinoma prognosis by KM survival curves and ROC curves. A seven-gene risk score consisting of NAT1, CDC25C, ATP2A3, MMP3, EEF1A2, PBK, and TIMP1 showed strong prognostic value. Meanwhile, we made a nomogram to predict the survival rate of COAD patients. The immune infiltration assay showed T cells. CD4 memory. Rest and macrophages. M0 has a higher proportion in COAD, and 11 genes related to tumor immunity are important. GDSC2-based drug susceptibility analysis showed that 6 out of 198 drugs were significant in COAD. Anoikis-related genes have potential value in predicting the prognosis of COAD and provide clues for developing new therapeutic strategies for COAD. Immune infiltration and drug susceptibility results provide important clues for finding new personalized treatment options for COAD. These findings also suggest possible mechanisms that may affect prognosis. These results are the starting point for planning individualized treatment and managing patient outcomes.
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spelling pubmed-104573032023-08-27 The anoikis-related gene signature predicts survival accurately in colon adenocarcinoma Hu, Gunchu Li, Jian Zeng, Yi Liu, Lixin Yu, Zhuowen Qi, Xiaoyan Liu, Kuijie Yao, Hongliang Sci Rep Article Colon adenocarcinoma (COAD) is a serious public health problem, the third most common cancer and the second most deadly cancer in the world. About 9.4% of cancer-related deaths in 2020 were due to COAD. Anoikis is a specialized form of programmed cell death that plays an important role in tumor invasion and metastasis. The presence of anti-anoikis factors is associated with tumor aggressiveness and drug resistance. Various bioinformatic methods, such as differential expression analysis, and functional annotation analysis, machine learning, were used in this study. RNA-sequencing and clinical data from COAD patients were obtained from the Gene expression omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases. Construction of a prognostic nomogram for predicting overall survival (OS) using multivariate analysis and Lasso-Cox regression. Immunohistochemistry (IHC) was our method of validating the expression of seven genes that are linked to anoikis in COAD. We identified seven anoikis-related genes as predictors of COAD survival and prognosis, and confirmed their accuracy in predicting colon adenocarcinoma prognosis by KM survival curves and ROC curves. A seven-gene risk score consisting of NAT1, CDC25C, ATP2A3, MMP3, EEF1A2, PBK, and TIMP1 showed strong prognostic value. Meanwhile, we made a nomogram to predict the survival rate of COAD patients. The immune infiltration assay showed T cells. CD4 memory. Rest and macrophages. M0 has a higher proportion in COAD, and 11 genes related to tumor immunity are important. GDSC2-based drug susceptibility analysis showed that 6 out of 198 drugs were significant in COAD. Anoikis-related genes have potential value in predicting the prognosis of COAD and provide clues for developing new therapeutic strategies for COAD. Immune infiltration and drug susceptibility results provide important clues for finding new personalized treatment options for COAD. These findings also suggest possible mechanisms that may affect prognosis. These results are the starting point for planning individualized treatment and managing patient outcomes. Nature Publishing Group UK 2023-08-25 /pmc/articles/PMC10457303/ /pubmed/37626132 http://dx.doi.org/10.1038/s41598-023-40907-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Hu, Gunchu
Li, Jian
Zeng, Yi
Liu, Lixin
Yu, Zhuowen
Qi, Xiaoyan
Liu, Kuijie
Yao, Hongliang
The anoikis-related gene signature predicts survival accurately in colon adenocarcinoma
title The anoikis-related gene signature predicts survival accurately in colon adenocarcinoma
title_full The anoikis-related gene signature predicts survival accurately in colon adenocarcinoma
title_fullStr The anoikis-related gene signature predicts survival accurately in colon adenocarcinoma
title_full_unstemmed The anoikis-related gene signature predicts survival accurately in colon adenocarcinoma
title_short The anoikis-related gene signature predicts survival accurately in colon adenocarcinoma
title_sort anoikis-related gene signature predicts survival accurately in colon adenocarcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10457303/
https://www.ncbi.nlm.nih.gov/pubmed/37626132
http://dx.doi.org/10.1038/s41598-023-40907-x
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