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A pan-cancer analysis of potassium channel tetramerization domain containing 12 in human cancer

Abnormal expression of the potassium channel tetramerization domain containing 12 (KCTD12) is closely related to the occurrence and development of various tumors, but a pan-cancer analysis of KCTD12 has not yet been conducted. We explored the association between KCTD12 and more than 30 human maligna...

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Autores principales: Liu, Pan, Liu, Zhilan, Luo, Qiankun, Fu, Qiang, Zhang, Xu, Yu, Pengfei, Zhou, Shuai, Wang, Yingying, Zhang, Jiali, Chen, Song, Zhang, Hongwei, Zhu, Qinghai, Qin, Tao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10457314/
https://www.ncbi.nlm.nih.gov/pubmed/37626178
http://dx.doi.org/10.1038/s41598-023-41091-8
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author Liu, Pan
Liu, Zhilan
Luo, Qiankun
Fu, Qiang
Zhang, Xu
Yu, Pengfei
Zhou, Shuai
Wang, Yingying
Zhang, Jiali
Chen, Song
Zhang, Hongwei
Zhu, Qinghai
Qin, Tao
author_facet Liu, Pan
Liu, Zhilan
Luo, Qiankun
Fu, Qiang
Zhang, Xu
Yu, Pengfei
Zhou, Shuai
Wang, Yingying
Zhang, Jiali
Chen, Song
Zhang, Hongwei
Zhu, Qinghai
Qin, Tao
author_sort Liu, Pan
collection PubMed
description Abnormal expression of the potassium channel tetramerization domain containing 12 (KCTD12) is closely related to the occurrence and development of various tumors, but a pan-cancer analysis of KCTD12 has not yet been conducted. We explored the association between KCTD12 and more than 30 human malignancies using The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. First, the mRNA and protein levels of KCTD12 were examined and their correlations with tumor stage and survival were explored. Second, we analyzed the infiltration of CD8(+) and CD4(+) T cells and cancer-associated fibroblasts in tumors and explored the correlation between KCTD12 expression and tumor cell stemness, genomic heterogeneity, and diagnostic specificity. Finally, we explored the molecular mechanisms associated with KCTD12 using KEGG/GO analysis. The results showed that KCTD12 mRNA and protein expression levels decreased in most tumors was significantly associated with the prognosis of tumor patients, and the phosphorylation level of KCTD12 decreased in several tumors, such as S200 and T196, pancreatic adenocarcinoma (PAAD), lung adenocarcinoma (LUAD), and breast invasive cancer (BRCA). The expression of KCTD12 was positively correlated with the degree of cancer-associated fibroblasts infiltration in cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC), head and neck squamous cell carcinoma (HNSC), PAAD, and stomach adenocarcinoma (STAD). The relationship between KCTD12 expression and CD8(+) and CD4(+) T cell infiltration was also clarified. KCTD12 showed high diagnostic sensitivity for various types of tumors and may be involved in tumor cell biology by affecting tumor cell stemness, tumor burden, and other characteristics. Finally, we analyzed the molecular functions of KCTD12 and possible KEGG/GO signaling pathways. In this study, we developed a biological marker for diagnosis, prognosis, and immune infiltration of the pan-cancers.
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spelling pubmed-104573142023-08-27 A pan-cancer analysis of potassium channel tetramerization domain containing 12 in human cancer Liu, Pan Liu, Zhilan Luo, Qiankun Fu, Qiang Zhang, Xu Yu, Pengfei Zhou, Shuai Wang, Yingying Zhang, Jiali Chen, Song Zhang, Hongwei Zhu, Qinghai Qin, Tao Sci Rep Article Abnormal expression of the potassium channel tetramerization domain containing 12 (KCTD12) is closely related to the occurrence and development of various tumors, but a pan-cancer analysis of KCTD12 has not yet been conducted. We explored the association between KCTD12 and more than 30 human malignancies using The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. First, the mRNA and protein levels of KCTD12 were examined and their correlations with tumor stage and survival were explored. Second, we analyzed the infiltration of CD8(+) and CD4(+) T cells and cancer-associated fibroblasts in tumors and explored the correlation between KCTD12 expression and tumor cell stemness, genomic heterogeneity, and diagnostic specificity. Finally, we explored the molecular mechanisms associated with KCTD12 using KEGG/GO analysis. The results showed that KCTD12 mRNA and protein expression levels decreased in most tumors was significantly associated with the prognosis of tumor patients, and the phosphorylation level of KCTD12 decreased in several tumors, such as S200 and T196, pancreatic adenocarcinoma (PAAD), lung adenocarcinoma (LUAD), and breast invasive cancer (BRCA). The expression of KCTD12 was positively correlated with the degree of cancer-associated fibroblasts infiltration in cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC), head and neck squamous cell carcinoma (HNSC), PAAD, and stomach adenocarcinoma (STAD). The relationship between KCTD12 expression and CD8(+) and CD4(+) T cell infiltration was also clarified. KCTD12 showed high diagnostic sensitivity for various types of tumors and may be involved in tumor cell biology by affecting tumor cell stemness, tumor burden, and other characteristics. Finally, we analyzed the molecular functions of KCTD12 and possible KEGG/GO signaling pathways. In this study, we developed a biological marker for diagnosis, prognosis, and immune infiltration of the pan-cancers. Nature Publishing Group UK 2023-08-25 /pmc/articles/PMC10457314/ /pubmed/37626178 http://dx.doi.org/10.1038/s41598-023-41091-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Liu, Pan
Liu, Zhilan
Luo, Qiankun
Fu, Qiang
Zhang, Xu
Yu, Pengfei
Zhou, Shuai
Wang, Yingying
Zhang, Jiali
Chen, Song
Zhang, Hongwei
Zhu, Qinghai
Qin, Tao
A pan-cancer analysis of potassium channel tetramerization domain containing 12 in human cancer
title A pan-cancer analysis of potassium channel tetramerization domain containing 12 in human cancer
title_full A pan-cancer analysis of potassium channel tetramerization domain containing 12 in human cancer
title_fullStr A pan-cancer analysis of potassium channel tetramerization domain containing 12 in human cancer
title_full_unstemmed A pan-cancer analysis of potassium channel tetramerization domain containing 12 in human cancer
title_short A pan-cancer analysis of potassium channel tetramerization domain containing 12 in human cancer
title_sort pan-cancer analysis of potassium channel tetramerization domain containing 12 in human cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10457314/
https://www.ncbi.nlm.nih.gov/pubmed/37626178
http://dx.doi.org/10.1038/s41598-023-41091-8
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